Variant report

Variant	rs74109162
Chromosome Location	chr13:94608867-94608868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1536779	1.00[AMR][1000 genomes]
rs56206667	1.00[AMR][1000 genomes]
rs57598130	1.00[AMR][1000 genomes]
rs59722893	1.00[AMR][1000 genomes]
rs74109178	1.00[AMR][1000 genomes]
rs74109187	1.00[AMR][1000 genomes]
rs74109188	1.00[AMR][1000 genomes]
rs74109202	1.00[AMR][1000 genomes]
rs74111403	1.00[AMR][1000 genomes]
rs74111406	1.00[AMR][1000 genomes]
rs74111408	1.00[AMR][1000 genomes]
rs74111409	1.00[AMR][1000 genomes]
rs74111410	1.00[AMR][1000 genomes]
rs74111423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74111428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94607400-94609000	Enhancers	Fetal Brain Male	brain
2	chr13:94607800-94609800	Enhancers	Fetal Stomach	stomach
3	chr13:94608000-94609400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:94608200-94609000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:94608200-94609000	Enhancers	HepG2	liver
6	chr13:94608200-94609200	Enhancers	Liver	Liver
7	chr13:94608200-94609400	Enhancers	Ovary	ovary
8	chr13:94608400-94609000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:94608400-94609000	Enhancers	Colon Smooth Muscle	Colon
10	chr13:94608400-94609000	Enhancers	Fetal Intestine Small	intestine
11	chr13:94608400-94609000	Enhancers	A549	lung
12	chr13:94608600-94609000	Enhancers	Adipose Nuclei	Adipose
13	chr13:94608800-94609400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:94608800-94609400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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