Variant report

Variant	rs74111408
Chromosome Location	chr13:94683166-94683167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1536779	1.00[AMR][1000 genomes]
rs56206667	1.00[AMR][1000 genomes]
rs57598130	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59722893	1.00[AMR][1000 genomes]
rs73544033	0.83[ASN][1000 genomes]
rs74109162	1.00[AMR][1000 genomes]
rs74109178	1.00[AMR][1000 genomes]
rs74109187	1.00[AMR][1000 genomes]
rs74109188	1.00[AMR][1000 genomes]
rs74109202	1.00[AMR][1000 genomes]
rs74111403	1.00[AMR][1000 genomes]
rs74111406	1.00[AMR][1000 genomes]
rs74111409	1.00[AMR][1000 genomes]
rs74111410	1.00[AMR][1000 genomes]
rs74111423	1.00[AMR][1000 genomes]
rs74111426	1.00[AMR][1000 genomes]
rs74111427	1.00[AMR][1000 genomes]
rs74111428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1052141	chr13:94596760-94689892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900923	chr13:94641894-94692925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94675000-94683400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94678600-94686400	Weak transcription	Fetal Stomach	stomach
3	chr13:94681200-94683200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:94681200-94683200	Weak transcription	Ovary	ovary
5	chr13:94681200-94683600	Weak transcription	Fetal Intestine Large	intestine
6	chr13:94681200-94685200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:94681400-94683200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:94681600-94685600	Weak transcription	Brain Germinal Matrix	brain
9	chr13:94681600-94685800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:94682000-94685800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:94682000-94685800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:94682600-94683200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:94682800-94683600	Enhancers	Rectal Smooth Muscle	rectum
14	chr13:94682800-94683800	Enhancers	Fetal Heart	heart
15	chr13:94682800-94685000	Enhancers	Colon Smooth Muscle	Colon
16	chr13:94682800-94685600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:94683000-94685800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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