Variant report

Variant	rs74117034
Chromosome Location	chr10:4112821-4112822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10736985	1.00[AMR][1000 genomes]
rs17131994	1.00[AMR][1000 genomes]
rs7067895	1.00[AMR][1000 genomes]
rs7080390	1.00[AMR][1000 genomes]
rs7091315	1.00[AMR][1000 genomes]
rs74117032	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4104400-4117200	Weak transcription	Small Intestine	intestine
2	chr10:4107800-4113000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:4108000-4115000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:4109200-4113000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:4109200-4113000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:4109400-4113000	Enhancers	HUVEC	blood vessel
7	chr10:4109400-4113400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:4109800-4113400	Enhancers	HMEC	breast
9	chr10:4109800-4116200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:4110000-4113000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:4110200-4113200	Enhancers	NHEK	skin
12	chr10:4110200-4113400	Weak transcription	Primary B cells from cord blood	blood
13	chr10:4110200-4115400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:4110200-4116000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:4110400-4115800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:4110400-4116000	Weak transcription	HSMM	muscle
17	chr10:4110400-4117000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:4110600-4116200	Weak transcription	Stomach Mucosa	stomach
19	chr10:4110800-4115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:4110800-4116000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:4111000-4114800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:4111400-4114000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:4111600-4113000	Enhancers	Fetal Lung	lung
24	chr10:4111600-4113200	Enhancers	Ovary	ovary
25	chr10:4111600-4113400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:4111800-4113000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:4111800-4113000	Weak transcription	Esophagus	oesophagus
28	chr10:4112000-4113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:4112000-4113200	Weak transcription	Placenta	Placenta
30	chr10:4112000-4116000	Weak transcription	Primary T cells from cord blood	blood
31	chr10:4112000-4116000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:4112000-4116000	Weak transcription	Right Ventricle	heart
33	chr10:4112000-4116200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:4112000-4116200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:4112000-4116200	Weak transcription	Fetal Thymus	thymus
36	chr10:4112000-4116200	Weak transcription	Left Ventricle	heart
37	chr10:4112000-4122000	Weak transcription	Spleen	Spleen
38	chr10:4112000-4124600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:4112200-4113200	Weak transcription	Aorta	Aorta
40	chr10:4112200-4115600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:4112200-4115800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:4112200-4115800	Weak transcription	Adipose Nuclei	Adipose
43	chr10:4112200-4115800	Weak transcription	HSMMtube	muscle
44	chr10:4112200-4115800	Weak transcription	NHLF	lung
45	chr10:4112200-4116000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:4112200-4116000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:4112200-4116000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:4112200-4116200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:4112200-4116200	Weak transcription	Right Atrium	heart
50	chr10:4112200-4116200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links