The 2.0 version of rSNPBase

Variant report

Variant rs74124247
Chromosome Location chr1:172556739-172556740
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172511800-172557800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:172514200-172558800 Weak transcription Small Intestine intestine
3 chr1:172519200-172559000 Weak transcription Psoas Muscle Psoas
4 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
5 chr1:172521800-172560400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
6 chr1:172527000-172558000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:172534800-172558000 Weak transcription Stomach Smooth Muscle stomach
8 chr1:172535200-172558000 Weak transcription HSMMtube muscle
9 chr1:172535400-172558000 Weak transcription Left Ventricle heart
10 chr1:172535400-172558000 Weak transcription Right Ventricle heart
11 chr1:172535400-172558200 Weak transcription Brain Substantia Nigra brain
12 chr1:172535600-172558000 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:172535600-172569200 Weak transcription Gastric stomach
14 chr1:172536000-172558000 Weak transcription Fetal Stomach stomach
15 chr1:172536000-172565400 Weak transcription Ovary ovary
16 chr1:172536000-172565600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:172536000-172566000 Weak transcription Aorta Aorta
18 chr1:172537400-172565600 Weak transcription Lung lung
19 chr1:172540200-172557400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:172540200-172558000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
22 chr1:172540400-172557000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:172540400-172557800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr1:172540400-172557800 Weak transcription Primary T cells from cord blood blood
25 chr1:172540400-172557800 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:172540400-172557800 Weak transcription Thymus Thymus
27 chr1:172540400-172557800 Weak transcription GM12878-XiMat blood
28 chr1:172540400-172558000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:172540400-172558000 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:172540400-172558000 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr1:172540400-172558000 Weak transcription Brain Hippocampus Middle brain
32 chr1:172540400-172558000 Weak transcription Fetal Brain Female brain
33 chr1:172540400-172558000 Weak transcription Fetal Kidney kidney
34 chr1:172540400-172558000 Weak transcription Fetal Muscle Leg muscle
35 chr1:172540400-172558200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:172540400-172558400 Weak transcription Brain Cingulate Gyrus brain
37 chr1:172540400-172559600 Weak transcription H9 Cell Line embryonic stem cell
38 chr1:172540400-172565600 Weak transcription Esophagus oesophagus
39 chr1:172540400-172565800 Weak transcription Pancreas Pancrea
40 chr1:172540600-172565400 Weak transcription Fetal Intestine Small intestine
41 chr1:172541000-172558000 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr1:172541600-172565400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:172542000-172559600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:172544400-172558000 Weak transcription Placenta Amnion Placenta Amnion
45 chr1:172544600-172558200 Weak transcription Brain Germinal Matrix brain
46 chr1:172545800-172557000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr1:172548000-172558200 Weak transcription Fetal Brain Male brain
48 chr1:172548400-172565600 Weak transcription Rectal Smooth Muscle rectum
49 chr1:172548600-172557200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr1:172548600-172557200 Weak transcription HepG2 liver

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Last update: Aug 31, 2015