Variant report

Variant	rs74124719
Chromosome Location	chr1:159768138-159768139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:159768080-159768230	GM12873	blood:	n/a	n/a
2	CTCF	chr1:159768000-159768150	HEK293	kidney:	n/a	n/a
3	CTCF	chr1:159768060-159768210	AG09319	gingival:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159767764..159770005-chr1:159860953..159862581,56	MCF-7	breast:
2	chr1:159767618..159769808-chr1:159861062..159862249,21	MCF-7	breast:
3	chr1:159750106..159750732-chr1:159767420..159768298,2	MCF-7	breast:
4	chr1:159767829..159770101-chr1:159851843..159854552,2	MCF-7	breast:
5	chr1:159768046..159769566-chr1:159975811..159977855,12	K562	blood:
6	chr1:159756652..159760361-chr1:159765566..159768582,3	K562	blood:
7	chr1:159767920..159768832-chr1:159977164..159978145,2	MCF-7	breast:
8	chr1:159767187..159770392-chr1:159770720..159774821,3	K562	blood:
9	chr1:159760951..159764398-chr1:159766034..159769710,4	K562	blood:
10	chr1:159766964..159768687-chr1:159770720..159772880,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16842675	1.00[AMR][1000 genomes]
rs55873932	1.00[AMR][1000 genomes]
rs56010909	1.00[AMR][1000 genomes]
rs57971988	1.00[AMR][1000 genomes]
rs59322471	1.00[AMR][1000 genomes]
rs60602471	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60975039	1.00[AMR][1000 genomes]
rs74124720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159765600-159770000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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