Variant report

Variant	rs74124724
Chromosome Location	chr1:159794891-159794892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159793598..159795124-chr1:159893329..159895732,2	K562	blood:
2	chr1:159794122..159796114-chr1:159799555..159801580,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158710	Chromatin interaction
ENSG00000158714	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16842675	1.00[AMR][1000 genomes]
rs55873932	1.00[AMR][1000 genomes]
rs56010909	1.00[AMR][1000 genomes]
rs57971988	1.00[AMR][1000 genomes]
rs59322471	1.00[AMR][1000 genomes]
rs60602471	1.00[AMR][1000 genomes]
rs60975039	1.00[AMR][1000 genomes]
rs74124719	1.00[AMR][1000 genomes]
rs74124720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159774800-159796000	Weak transcription	Right Atrium	heart
2	chr1:159791000-159795800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:159791000-159796600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:159792000-159796000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:159792400-159796600	Enhancers	Placenta	Placenta
6	chr1:159793000-159799000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:159793400-159795600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:159793400-159796000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr1:159793400-159799800	Weak transcription	Lung	lung
10	chr1:159793600-159795200	Weak transcription	Spleen	Spleen
11	chr1:159793600-159797000	Weak transcription	Gastric	stomach
12	chr1:159793800-159795000	Weak transcription	HSMMtube	muscle
13	chr1:159793800-159796800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:159793800-159798800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:159794000-159795600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:159794000-159807400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:159794200-159795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:159794200-159804600	Weak transcription	Fetal Intestine Small	intestine
19	chr1:159794400-159796200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr1:159794600-159797200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:159794600-159801000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr1:159794800-159795200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:159794800-159796000	Weak transcription	Esophagus	oesophagus
24	chr1:159794800-159796600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr1:159794800-159796800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:159794800-159797200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:159794800-159798200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr1:159794800-159798600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:159794800-159798800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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