Variant report

Variant	rs74130934
Chromosome Location	chr1:193178994-193178995
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193178318..193180167-chr1:193181883..193183720,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1536100	0.83[AMR][1000 genomes]
rs4657746	0.83[AMR][1000 genomes]
rs60186515	0.83[AMR][1000 genomes]
rs74130932	0.83[AMR][1000 genomes]
rs74130933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7531808	1.00[AMR][1000 genomes]
rs7551600	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193155800-193183000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:193155800-193243400	Weak transcription	Pancreas	Pancrea
3	chr1:193156200-193216800	Weak transcription	Aorta	Aorta
4	chr1:193156600-193180200	Weak transcription	NH-A	brain
5	chr1:193159000-193210000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:193159800-193185000	Weak transcription	Fetal Brain Male	brain
7	chr1:193160200-193180200	Weak transcription	HSMMtube	muscle
8	chr1:193162000-193186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:193162000-193186200	Weak transcription	Placenta	Placenta
10	chr1:193162200-193180400	Weak transcription	NHLF	lung
11	chr1:193162200-193183000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:193162200-193186200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:193162400-193186000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:193163000-193180000	Weak transcription	Hela-S3	cervix
15	chr1:193166800-193181400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:193167800-193210400	Weak transcription	Ovary	ovary
17	chr1:193168000-193228400	Weak transcription	Stomach Mucosa	stomach
18	chr1:193168800-193184800	Weak transcription	Fetal Stomach	stomach
19	chr1:193169000-193190800	Weak transcription	Brain Anterior Caudate	brain
20	chr1:193169400-193186400	Weak transcription	Left Ventricle	heart
21	chr1:193170000-193186200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:193170200-193191200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:193170400-193216000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:193172600-193185600	Weak transcription	Brain Hippocampus Middle	brain
25	chr1:193172800-193180200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:193172800-193186200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:193173400-193186400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:193173600-193181000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:193174000-193183000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:193174600-193180200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:193174800-193180400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:193174800-193186000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:193175600-193182600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:193175600-193183000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:193175800-193180000	Weak transcription	HMEC	breast
36	chr1:193175800-193180200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:193175800-193180200	Weak transcription	NHDF-Ad	bronchial
38	chr1:193175800-193185600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:193176200-193182000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:193176400-193180000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:193176400-193180000	Weak transcription	Dnd41	blood
42	chr1:193176400-193180200	Weak transcription	NHEK	skin
43	chr1:193176400-193180200	Weak transcription	Osteobl	bone
44	chr1:193176600-193180000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:193176600-193180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:193176600-193180200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:193176600-193180400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:193176600-193180400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:193176600-193180600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr1:193176600-193180600	Strong transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links