Variant report

Variant	rs7531808
Chromosome Location	chr1:193153041-193153042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:193091690..193093803-chr1:193152706..193155451,2	K562	blood:
2	chr1:193146146..193149331-chr1:193151416..193154903,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1536100	0.83[AMR][1000 genomes]
rs4657746	0.83[AMR][1000 genomes]
rs56067713	0.94[AFR][1000 genomes]
rs58056953	0.82[AFR][1000 genomes]
rs60186515	0.83[AMR][1000 genomes]
rs6682435	0.87[AFR][1000 genomes]
rs6683844	0.81[AFR][1000 genomes]
rs74130921	0.81[AFR][1000 genomes]
rs74130922	0.81[AFR][1000 genomes]
rs74130927	0.87[AFR][1000 genomes]
rs74130931	0.87[AFR][1000 genomes]
rs74130932	0.83[AMR][1000 genomes]
rs74130933	1.00[AMR][1000 genomes]
rs74130934	1.00[AMR][1000 genomes]
rs7551600	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832148	chr1:193143945-193292897	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv872831	chr1:193152317-193322087	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193094800-193155000	Weak transcription	Aorta	Aorta
2	chr1:193110000-193155200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:193121000-193155200	Weak transcription	Pancreas	Pancrea
4	chr1:193123200-193153600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:193123400-193155200	Weak transcription	Thymus	Thymus
6	chr1:193123800-193153200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:193124000-193153600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:193124000-193154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:193126200-193154400	Weak transcription	NHEK	skin
10	chr1:193126200-193155200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:193126200-193155200	Weak transcription	Gastric	stomach
12	chr1:193126800-193155000	Weak transcription	Fetal Thymus	thymus
13	chr1:193127600-193154400	Weak transcription	Hela-S3	cervix
14	chr1:193128600-193154800	Weak transcription	NH-A	brain
15	chr1:193129400-193153600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:193130400-193154800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:193131800-193158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:193133200-193153600	Weak transcription	Fetal Intestine Small	intestine
19	chr1:193133200-193154800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:193133200-193154800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:193134000-193154400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:193135600-193155000	Weak transcription	Small Intestine	intestine
23	chr1:193135600-193155200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:193137600-193154400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:193137600-193154800	Weak transcription	HMEC	breast
26	chr1:193140200-193154800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:193140400-193155200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:193140400-193159800	Weak transcription	Dnd41	blood
29	chr1:193140600-193154800	Weak transcription	HUVEC	blood vessel
30	chr1:193140600-193155200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr1:193140800-193154000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:193140800-193161400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:193142000-193154400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:193142200-193155400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr1:193142400-193154600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:193142800-193155200	Weak transcription	GM12878-XiMat	blood
37	chr1:193144200-193160400	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr1:193144600-193155400	Weak transcription	Primary B cells from cord blood	blood
39	chr1:193147800-193155000	Weak transcription	Primary T cells from cord blood	blood
40	chr1:193148400-193161200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:193149600-193156600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:193149800-193156600	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr1:193150000-193155000	Weak transcription	K562	blood
44	chr1:193150200-193156400	Active TSS	Brain Angular Gyrus	brain
45	chr1:193150400-193157600	Active TSS	Fetal Brain Female	brain
46	chr1:193150600-193153600	Weak transcription	Ovary	ovary
47	chr1:193150800-193154000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:193150800-193154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:193150800-193156000	Active TSS	Fetal Brain Male	brain
50	chr1:193150800-193156000	Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links