Variant report

Variant	rs74146239
Chromosome Location	chr10:89739288-89739289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35465320	1.00[AMR][1000 genomes]
rs74146231	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146236	0.80[AFR][1000 genomes]
rs74146237	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89724800-89739400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:89726600-89739400	Weak transcription	Fetal Thymus	thymus
3	chr10:89734000-89739400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:89735400-89740800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:89738200-89739400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:89738400-89739600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:89738400-89739600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:89738400-89739800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:89738600-89739600	Enhancers	NHEK	skin
10	chr10:89738600-89739800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:89738600-89739800	Enhancers	HMEC	breast
12	chr10:89738800-89739600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:89738800-89739800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:89739000-89739600	Enhancers	Adipose Nuclei	Adipose
15	chr10:89739200-89740400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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