Variant report

Variant	rs74146231
Chromosome Location	chr10:89627037-89627038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr10:89626943-89627445	K562	blood:	n/a	n/a
2	CHD1	chr10:89624056-89627544	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89614074..89616634-chr10:89625613..89627325,2	MCF-7	breast:

Variant related genes	Relation type
KLLN	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12256091	1.00[ASN][1000 genomes]
rs34262484	0.90[AFR][1000 genomes]
rs34436189	1.00[ASN][1000 genomes]
rs35465320	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61417477	0.90[AFR][1000 genomes]
rs74146234	0.85[AFR][1000 genomes]
rs74146236	0.95[AFR][1000 genomes]
rs74146237	0.84[AFR][1000 genomes]
rs74146239	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146636	1.00[ASN][1000 genomes]
rs7897058	1.00[ASN][1000 genomes]
rs7915113	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041392	chr10:89615125-89632510	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv1793643	chr10:89625582-89645473	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89620400-89628600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr10:89621000-89627200	Active TSS	Brain Cingulate Gyrus	brain
3	chr10:89621000-89628000	Active TSS	Brain Hippocampus Middle	brain
4	chr10:89621000-89628600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:89621000-89628600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr10:89621200-89627400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:89621200-89628400	Active TSS	Fetal Stomach	stomach
8	chr10:89621200-89628800	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr10:89621200-89628800	Active TSS	Fetal Kidney	kidney
10	chr10:89621200-89629000	Active TSS	Right Atrium	heart
11	chr10:89621200-89629000	Active TSS	Right Ventricle	heart
12	chr10:89621200-89630800	Active TSS	Aorta	Aorta
13	chr10:89621400-89627200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:89621400-89627200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:89621400-89627200	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr10:89621400-89627600	Active TSS	Fetal Lung	lung
17	chr10:89621400-89628000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr10:89621400-89628200	Active TSS	Hela-S3	cervix
19	chr10:89621400-89628400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:89621400-89628400	Active TSS	Fetal Intestine Small	intestine
21	chr10:89621400-89628600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:89621400-89628600	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:89621400-89628600	Active TSS	HSMMtube	muscle
24	chr10:89621400-89628800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:89621400-89628800	Active TSS	Muscle Satellite Cultured Cells	--
26	chr10:89621400-89628800	Active TSS	Fetal Intestine Large	intestine
27	chr10:89621400-89628800	Active TSS	K562	blood
28	chr10:89621400-89629000	Active TSS	Psoas Muscle	Psoas
29	chr10:89621400-89629800	Active TSS	Ovary	ovary
30	chr10:89621600-89627200	Active TSS	Brain Angular Gyrus	brain
31	chr10:89621600-89627200	Active TSS	Brain Anterior Caudate	brain
32	chr10:89621600-89627200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr10:89621600-89627800	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr10:89621600-89627800	Active TSS	Liver	Liver
35	chr10:89621600-89628200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:89621600-89628200	Active TSS	Colon Smooth Muscle	Colon
37	chr10:89621600-89628800	Active TSS	Thymus	Thymus
38	chr10:89621600-89629000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:89621600-89629800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:89621800-89627200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:89621800-89627200	Active TSS	Osteobl	bone
42	chr10:89621800-89627400	Active TSS	Placenta	Placenta
43	chr10:89621800-89627600	Active TSS	A549	lung
44	chr10:89621800-89627800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:89621800-89628200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:89621800-89628200	Active TSS	Fetal Muscle Leg	muscle
47	chr10:89621800-89628200	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:89621800-89628400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:89621800-89628400	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr10:89621800-89628400	Active TSS	NHDF-Ad	bronchial

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