Variant report

Variant	rs74146268
Chromosome Location	chr1:224937102-224937103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2648740	1.00[EUR][1000 genomes]
rs2648741	1.00[EUR][1000 genomes]
rs2786561	1.00[EUR][1000 genomes]
rs56879180	1.00[EUR][1000 genomes]
rs60936981	1.00[EUR][1000 genomes]
rs61631299	1.00[EUR][1000 genomes]
rs712088	1.00[EUR][1000 genomes]
rs712089	1.00[EUR][1000 genomes]
rs74146223	1.00[EUR][1000 genomes]
rs74146267	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224931000-224939000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:224931800-224938800	Weak transcription	Fetal Brain Female	brain
3	chr1:224933400-224938600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:224933600-224938200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:224935600-224939200	Weak transcription	Lung	lung
6	chr1:224935800-224946200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:224936000-224937400	Weak transcription	GM12878-XiMat	blood
8	chr1:224936000-224937800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:224936000-224937800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:224936000-224938200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:224936000-224939400	Weak transcription	Right Atrium	heart
12	chr1:224936200-224938000	Weak transcription	Dnd41	blood
13	chr1:224936200-224938600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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