Variant report

Variant	rs74149185
Chromosome Location	chr10:94732396-94732397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94730886..94732779-chr10:94830239..94832619,2	K562	blood:
2	chr10:94723115..94725213-chr10:94730158..94733816,3	K562	blood:
3	chr10:94730900..94735005-chr10:94830086..94835564,6	K562	blood:
4	chr10:94723359..94725094-chr10:94732291..94733816,2	K562	blood:
5	chr10:94607294..94609486-chr10:94731116..94732798,2	K562	blood:
6	chr10:94731609..94733438-chr10:94735155..94737071,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000095596	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17107949	0.87[AFR][1000 genomes]
rs17107977	0.83[AFR][1000 genomes]
rs1806690	0.83[AFR][1000 genomes]
rs58650001	1.00[AMR][1000 genomes]
rs58753829	0.92[AFR][1000 genomes]
rs60626109	0.83[AFR][1000 genomes]
rs74149153	0.83[AFR][1000 genomes]
rs74149160	0.87[AFR][1000 genomes]
rs74149166	0.83[AFR][1000 genomes]
rs74149170	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
4	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
6	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
7	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
12	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:94718400-94733800	Weak transcription	Liver	Liver
18	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:94722000-94732400	Weak transcription	Fetal Heart	heart
20	chr10:94722800-94733400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:94725600-94734600	Weak transcription	Fetal Lung	lung
22	chr10:94728600-94733000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:94729000-94733200	Strong transcription	Primary B cells from cord blood	blood
24	chr10:94729800-94734400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94729800-94735000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:94730000-94735600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:94730800-94732600	Weak transcription	Fetal Brain Male	brain
28	chr10:94730800-94733600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:94730800-94734600	Weak transcription	Placenta	Placenta
30	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:94731000-94732600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr10:94731200-94732800	Strong transcription	Primary T cells from cord blood	blood
34	chr10:94731400-94732600	Enhancers	HUVEC	blood vessel
35	chr10:94731400-94732600	Enhancers	Osteobl	bone
36	chr10:94731400-94732800	Enhancers	HMEC	breast
37	chr10:94731400-94732800	Enhancers	HSMM	muscle
38	chr10:94731400-94733200	Flanking Active TSS	K562	blood
39	chr10:94731400-94733800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:94731600-94732600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:94731600-94732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:94731600-94732600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:94731600-94732600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:94731600-94732600	Flanking Active TSS	Hela-S3	cervix
45	chr10:94731600-94732800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr10:94731600-94732800	Enhancers	Fetal Intestine Small	intestine
47	chr10:94731600-94733000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:94731600-94733000	Enhancers	Stomach Mucosa	stomach
49	chr10:94731600-94733200	Enhancers	NHLF	lung
50	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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