Variant report

Variant	rs74149166
Chromosome Location	chr10:94653878-94653879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94652774..94654911-chr10:94796709..94799688,2	MCF-7	breast:
2	chr10:94653732..94656423-chr10:94657725..94660166,2	K562	blood:
3	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:
4	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509648	1.00[EUR][1000 genomes]
rs17093820	1.00[EUR][1000 genomes]
rs17107949	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107977	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17108019	1.00[EUR][1000 genomes]
rs1806690	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986356	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55929600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283335	1.00[EUR][1000 genomes]
rs57988954	1.00[EUR][1000 genomes]
rs58753829	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60626109	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61426198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583849	1.00[EUR][1000 genomes]
rs7069896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149153	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149155	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149158	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149160	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149170	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74149171	1.00[EUR][1000 genomes]
rs74149175	1.00[EUR][1000 genomes]
rs74149183	1.00[EUR][1000 genomes]
rs74149184	1.00[EUR][1000 genomes]
rs74149185	0.83[AFR][1000 genomes]
rs74149188	1.00[EUR][1000 genomes]
rs74149191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
4	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:94649400-94654000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:94650400-94655200	Enhancers	Fetal Intestine Large	intestine
10	chr10:94650600-94654800	Enhancers	HMEC	breast
11	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:94650800-94654600	Enhancers	NHEK	skin
13	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
14	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:94651400-94655000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:94651800-94654000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:94651800-94655200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:94651800-94655400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:94651800-94655400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:94652000-94654200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:94652000-94655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:94652000-94655400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:94652000-94655400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr10:94652000-94655400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr10:94652400-94654000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:94652400-94654000	Weak transcription	Brain Substantia Nigra	brain
28	chr10:94652400-94654000	Genic enhancers	HUVEC	blood vessel
29	chr10:94652400-94654800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:94652400-94656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
32	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
34	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
35	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
38	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
39	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
40	chr10:94652600-94654000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:94652600-94654000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:94652600-94654000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:94652600-94654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:94652600-94654000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:94652600-94654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:94652600-94654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:94652600-94656200	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:94652600-94656400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:94652600-94656400	Weak transcription	K562	blood
50	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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