Variant report

Variant	rs55929600
Chromosome Location	chr10:94650914-94650915
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94623164..94625543-chr10:94648758..94650960,2	K562	blood:
2	chr10:94650650..94651477-chr10:94831181..94832053,2	MCF-7	breast:
3	chr10:94650712..94651544-chr10:95194677..95195247,2	MCF-7	breast:
4	chr10:94650712..94651345-chr10:95194633..95195177,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509648	1.00[EUR][1000 genomes]
rs17093820	1.00[EUR][1000 genomes]
rs17107949	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107977	1.00[EUR][1000 genomes]
rs17108019	1.00[EUR][1000 genomes]
rs1806690	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986356	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57283335	1.00[EUR][1000 genomes]
rs57988954	1.00[EUR][1000 genomes]
rs58753829	1.00[EUR][1000 genomes]
rs60626109	1.00[EUR][1000 genomes]
rs61426198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583849	1.00[EUR][1000 genomes]
rs7069896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149155	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149158	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149170	1.00[EUR][1000 genomes]
rs74149171	1.00[EUR][1000 genomes]
rs74149175	1.00[EUR][1000 genomes]
rs74149183	1.00[EUR][1000 genomes]
rs74149184	1.00[EUR][1000 genomes]
rs74149188	1.00[EUR][1000 genomes]
rs74149191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
5	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
6	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
15	chr10:94646600-94651400	Weak transcription	HepG2	liver
16	chr10:94646600-94651600	Weak transcription	NH-A	brain
17	chr10:94646600-94651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:94646600-94651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94646600-94651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:94646600-94651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:94646600-94651800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:94646600-94651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:94647800-94651800	Weak transcription	Fetal Heart	heart
29	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:94648400-94652000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:94648400-94652000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:94649200-94651200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr10:94649400-94652200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:94649400-94654000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:94649800-94652000	Weak transcription	Pancreas	Pancrea
36	chr10:94649800-94652200	Weak transcription	Lung	lung
37	chr10:94650000-94651800	Enhancers	A549	lung
38	chr10:94650200-94651200	Enhancers	K562	blood
39	chr10:94650200-94652400	Enhancers	HUVEC	blood vessel
40	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:94650400-94655200	Enhancers	Fetal Intestine Large	intestine
42	chr10:94650600-94651800	Enhancers	Hela-S3	cervix
43	chr10:94650600-94652600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:94650600-94654800	Enhancers	HMEC	breast
45	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:94650800-94651800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:94650800-94652000	Weak transcription	Psoas Muscle	Psoas
48	chr10:94650800-94654600	Enhancers	NHEK	skin
49	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
50	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood

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