Variant report

Variant	rs17107967
Chromosome Location	chr10:94648120-94648121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94646541..94648160-chr10:94657093..94659563,2	K562	blood:
2	chr10:94643437..94646429-chr10:94647651..94649627,2	K562	blood:
3	chr10:94646967..94649814-chr10:94651254..94653769,2	K562	blood:
4	chr10:94646967..94648497-chr10:94650916..94652754,2	K562	blood:
5	chr10:94637242..94640461-chr10:94646204..94649459,3	K562	blood:

Variant related genes	Relation type
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509648	1.00[EUR][1000 genomes]
rs17093820	1.00[EUR][1000 genomes]
rs17107949	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107977	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17108019	1.00[EUR][1000 genomes]
rs1806690	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986356	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55929600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283335	1.00[EUR][1000 genomes]
rs57988954	1.00[EUR][1000 genomes]
rs58753829	1.00[EUR][1000 genomes]
rs60626109	1.00[EUR][1000 genomes]
rs61426198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583849	1.00[EUR][1000 genomes]
rs7069896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149155	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149158	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149166	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149170	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74149171	1.00[EUR][1000 genomes]
rs74149175	1.00[EUR][1000 genomes]
rs74149183	1.00[EUR][1000 genomes]
rs74149184	1.00[EUR][1000 genomes]
rs74149188	1.00[EUR][1000 genomes]
rs74149191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
4	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
6	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94646000-94648600	Enhancers	HUVEC	blood vessel
14	chr10:94646200-94648200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
17	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
18	chr10:94646600-94648800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:94646600-94650200	Weak transcription	K562	blood
20	chr10:94646600-94651400	Weak transcription	HepG2	liver
21	chr10:94646600-94651600	Weak transcription	NH-A	brain
22	chr10:94646600-94651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:94646600-94651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:94646600-94651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:94646600-94651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:94646600-94651800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:94646600-94651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:94647000-94648800	Weak transcription	A549	lung
34	chr10:94647600-94648400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:94647800-94649400	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:94647800-94650400	Weak transcription	Fetal Intestine Large	intestine
37	chr10:94647800-94650800	Weak transcription	Fetal Intestine Small	intestine
38	chr10:94647800-94651800	Weak transcription	Fetal Heart	heart
39	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:94648000-94648400	Enhancers	Brain Angular Gyrus	brain

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