Variant report

Variant	rs74149162
Chromosome Location	chr10:94634580-94634581
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94633905..94635753-chr10:94639466..94642553,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509648	1.00[EUR][1000 genomes]
rs17093820	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17107949	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107977	1.00[EUR][1000 genomes]
rs17108019	1.00[EUR][1000 genomes]
rs1806690	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986356	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740379	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55929600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57283335	1.00[EUR][1000 genomes]
rs57988954	1.00[EUR][1000 genomes]
rs58753829	1.00[EUR][1000 genomes]
rs60626109	1.00[EUR][1000 genomes]
rs61426198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583849	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7069896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149155	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149158	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149170	1.00[EUR][1000 genomes]
rs74149171	1.00[EUR][1000 genomes]
rs74149175	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74149183	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74149184	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74149188	1.00[EUR][1000 genomes]
rs74149191	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94627200-94636000	Weak transcription	K562	blood
4	chr10:94632400-94636200	Weak transcription	Dnd41	blood
5	chr10:94633000-94636000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:94633000-94636000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:94633200-94636000	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94633200-94636000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:94633200-94636200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:94633200-94636200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:94633200-94636200	Weak transcription	A549	lung
12	chr10:94633200-94636400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:94633200-94640000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:94633200-94640200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:94633400-94636000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:94633400-94636000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:94633400-94636000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:94633400-94636200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:94633400-94636400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:94633400-94636600	Enhancers	HUVEC	blood vessel
21	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
22	chr10:94633600-94636000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:94633600-94636000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:94633600-94636000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94634400-94636000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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