Variant report

Variant	rs57283335
Chromosome Location	chr10:94702208-94702209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17093820	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17107949	1.00[EUR][1000 genomes]
rs17107967	1.00[EUR][1000 genomes]
rs17107977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1806690	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1986356	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3740379	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55929600	1.00[EUR][1000 genomes]
rs57988954	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58753829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60626109	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61426198	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583848	0.90[ASN][1000 genomes]
rs6583849	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069896	1.00[EUR][1000 genomes]
rs74149153	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149155	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149158	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149160	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149162	1.00[EUR][1000 genomes]
rs74149166	1.00[EUR][1000 genomes]
rs74149170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74149171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149183	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149184	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149188	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149191	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:94652600-94718000	Weak transcription	Ovary	ovary
4	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
5	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
7	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
8	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
11	chr10:94658600-94725800	Weak transcription	Lung	lung
12	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
15	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:94674800-94724600	Weak transcription	HSMM	muscle
17	chr10:94675000-94708600	Weak transcription	K562	blood
18	chr10:94676400-94706400	Weak transcription	Thymus	Thymus
19	chr10:94679400-94706200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:94680600-94712800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:94680800-94708000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:94681000-94707600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
24	chr10:94681600-94703600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:94686400-94703600	Weak transcription	Fetal Brain Female	brain
27	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:94687000-94703600	Weak transcription	Fetal Heart	heart
29	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:94687400-94724200	Weak transcription	NHLF	lung
31	chr10:94687600-94713200	Weak transcription	Brain Substantia Nigra	brain
32	chr10:94689200-94703400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:94689200-94703600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:94689200-94703600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:94689200-94706800	Weak transcription	Left Ventricle	heart
36	chr10:94689200-94710400	Weak transcription	Psoas Muscle	Psoas
37	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
38	chr10:94689400-94706800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:94689400-94710400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:94689800-94706800	Weak transcription	Liver	Liver
41	chr10:94689800-94714800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:94689800-94724600	Weak transcription	A549	lung
43	chr10:94690000-94703400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:94690000-94703600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:94690000-94703600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:94690000-94707800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:94690000-94717600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
49	chr10:94691600-94706400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:94692200-94717800	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links