Variant report

Variant	rs17108019
Chromosome Location	chr10:94717451-94717452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10509648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17093820	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17107967	1.00[EUR][1000 genomes]
rs17107977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1806690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1986356	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3740379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55929600	1.00[EUR][1000 genomes]
rs57283335	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57988954	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58753829	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60626109	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61426198	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583848	0.88[ASN][1000 genomes]
rs6583849	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7069896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7073161	0.90[CHB][hapmap]
rs74149153	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149155	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149158	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149160	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149162	1.00[EUR][1000 genomes]
rs74149166	1.00[EUR][1000 genomes]
rs74149170	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74149171	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149175	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74149183	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74149184	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74149188	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149191	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94718000	Weak transcription	Ovary	ovary
2	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
3	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
4	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
5	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
7	chr10:94658600-94725800	Weak transcription	Lung	lung
8	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
10	chr10:94674800-94724600	Weak transcription	HSMM	muscle
11	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:94687400-94724200	Weak transcription	NHLF	lung
15	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
16	chr10:94689800-94724600	Weak transcription	A549	lung
17	chr10:94690000-94717600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
19	chr10:94692200-94717800	Weak transcription	Brain Germinal Matrix	brain
20	chr10:94692800-94721800	Strong transcription	HUVEC	blood vessel
21	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
22	chr10:94699200-94721600	Weak transcription	Fetal Intestine Large	intestine
23	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:94701400-94720600	Weak transcription	Fetal Kidney	kidney
28	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
29	chr10:94704000-94718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:94704400-94717800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
33	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:94709000-94721800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:94709400-94720000	Weak transcription	Right Ventricle	heart
39	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:94711200-94730000	Weak transcription	K562	blood
41	chr10:94712200-94720600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
43	chr10:94713000-94728800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:94713200-94720600	Weak transcription	Fetal Stomach	stomach
45	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
47	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:94713400-94719400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:94713400-94723800	Weak transcription	Brain Angular Gyrus	brain
50	chr10:94713400-94730800	Weak transcription	Adipose Nuclei	Adipose

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