Variant report

Variant	rs74149171
Chromosome Location	chr10:94674773-94674774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94673421..94675833-chr10:94685564..94687724,2	MCF-7	breast:
2	chr10:94674000..94675687-chr10:94834281..94836039,2	K562	blood:
3	chr10:94674029..94674852-chr10:94724715..94725565,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509648	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17093820	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17107949	1.00[EUR][1000 genomes]
rs17107967	1.00[EUR][1000 genomes]
rs17107977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1806690	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1986356	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3740379	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55929600	1.00[EUR][1000 genomes]
rs57283335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57988954	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58753829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60626109	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61426198	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583848	0.90[ASN][1000 genomes]
rs6583849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069896	1.00[EUR][1000 genomes]
rs74149153	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149155	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149158	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149160	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149162	1.00[EUR][1000 genomes]
rs74149166	1.00[EUR][1000 genomes]
rs74149170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74149175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149183	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149184	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149188	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149191	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
2	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
3	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
7	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:94652600-94718000	Weak transcription	Ovary	ovary
9	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
10	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
12	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
13	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
19	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
20	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
21	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
26	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:94658600-94725800	Weak transcription	Lung	lung
28	chr10:94661800-94675800	Weak transcription	Thymus	Thymus
29	chr10:94661800-94688800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:94662400-94680000	Weak transcription	Fetal Brain Female	brain
31	chr10:94662400-94688400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:94662600-94680200	Weak transcription	A549	lung
33	chr10:94662600-94689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:94662800-94688200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:94664200-94680600	Weak transcription	Liver	Liver
37	chr10:94664400-94675800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:94664400-94693800	Weak transcription	HepG2	liver
39	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:94667200-94680200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:94667400-94675800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:94667400-94680200	Weak transcription	Fetal Intestine Large	intestine
43	chr10:94667400-94688000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:94667400-94688600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
46	chr10:94667600-94677400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:94668200-94675800	Weak transcription	Fetal Intestine Small	intestine
48	chr10:94670200-94678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:94670200-94679400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr10:94670600-94679800	Weak transcription	Primary T cells from cord blood	blood

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