Variant report

Variant	rs10509648
Chromosome Location	chr10:94740985-94740986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94740523..94743035-chr10:94748693..94750893,2	K562	blood:
2	chr10:94734172..94735769-chr10:94740914..94742509,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17093820	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17107949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[MEX][hapmap];1.00[EUR][1000 genomes]
rs17107967	1.00[EUR][1000 genomes]
rs17107977	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1806690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1986356	1.00[EUR][1000 genomes]
rs3740379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[MEX][hapmap];1.00[EUR][1000 genomes]
rs55929600	1.00[EUR][1000 genomes]
rs57283335	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57988954	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58753829	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60626109	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61426198	1.00[EUR][1000 genomes]
rs6583849	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[MEX][hapmap];1.00[EUR][1000 genomes]
rs7073161	0.90[CHB][hapmap]
rs74149153	1.00[EUR][1000 genomes]
rs74149155	1.00[EUR][1000 genomes]
rs74149158	1.00[EUR][1000 genomes]
rs74149160	1.00[EUR][1000 genomes]
rs74149162	1.00[EUR][1000 genomes]
rs74149166	1.00[EUR][1000 genomes]
rs74149170	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149175	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74149183	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149184	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149188	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74149191	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
3	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
6	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:94732200-94742400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
12	chr10:94732800-94742400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:94733400-94743600	Weak transcription	Primary T cells from cord blood	blood
16	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94734400-94741600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:94736000-94753600	Weak transcription	Gastric	stomach
22	chr10:94736800-94748800	Weak transcription	K562	blood
23	chr10:94737600-94741200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94737600-94744800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood
26	chr10:94740800-94741400	Strong transcription	HUVEC	blood vessel

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