Variant report

Variant	rs7073161
Chromosome Location	chr10:94826465-94826466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11814811	0.88[ASN][1000 genomes]
rs17093824	0.88[ASN][1000 genomes]
rs17108061	0.93[ASN][1000 genomes]
rs56280958	0.96[ASN][1000 genomes]
rs56699273	0.93[ASN][1000 genomes]
rs57573488	0.96[ASN][1000 genomes]
rs60312200	0.88[ASN][1000 genomes]
rs60353767	0.85[ASN][1000 genomes]
rs7069896	0.90[CHB][hapmap]
rs72558182	0.85[ASN][1000 genomes]
rs74149194	0.88[ASN][1000 genomes]
rs74149197	0.88[ASN][1000 genomes]
rs74149199	0.93[ASN][1000 genomes]
rs74151805	0.93[ASN][1000 genomes]
rs74151818	0.96[ASN][1000 genomes]
rs74151825	0.85[ASN][1000 genomes]
rs835280	0.81[TSI][hapmap]
rs976062	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7073161	FLJ37201	cis	cerebellum	SCAN
rs7073161	CYP26C1	cis	cerebellum	SCAN
rs7073161	SLC16A12	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94819800-94827800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:94822000-94826800	Weak transcription	Dnd41	blood
3	chr10:94822400-94827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94823000-94828200	Weak transcription	Pancreas	Pancrea
5	chr10:94823000-94828400	Weak transcription	Gastric	stomach
6	chr10:94823000-94829600	Weak transcription	K562	blood
7	chr10:94824000-94828200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:94825200-94827600	Weak transcription	Hela-S3	cervix
9	chr10:94825400-94830400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:94825600-94829200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:94826200-94826600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:94826200-94828000	Weak transcription	Spleen	Spleen
13	chr10:94826400-94826800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr10:94826400-94828000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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