Variant report

Variant	rs74151825
Chromosome Location	chr10:94834440-94834441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94833837..94835428-chr10:94886168..94888250,2	MCF-7	breast:
2	chr10:94829159..94830992-chr10:94834045..94836625,2	MCF-7	breast:
3	chr10:94833682..94835743-chr10:94838444..94841738,3	K562	blood:
4	chr10:94674000..94675687-chr10:94834281..94836039,2	K562	blood:
5	chr10:94833787..94835758-chr10:94855564..94858078,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11814811	0.93[EUR][1000 genomes]
rs17093824	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17108061	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56280958	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56699273	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57573488	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60312200	0.93[EUR][1000 genomes]
rs60353767	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61863116	0.82[ASN][1000 genomes]
rs7073161	0.85[ASN][1000 genomes]
rs72558182	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149194	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74149197	0.93[EUR][1000 genomes]
rs74149199	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151805	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151818	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976062	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94831400-94835400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr10:94831600-94835000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
3	chr10:94831600-94835200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:94831600-94835200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:94831600-94835400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr10:94831600-94835400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:94831600-94835400	Flanking Active TSS	Liver	Liver
8	chr10:94831600-94835800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr10:94831800-94835000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:94831800-94836000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94832400-94835200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:94832400-94835400	Bivalent Enhancer	Placenta	Placenta
13	chr10:94832800-94835000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:94832800-94835200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
17	chr10:94833000-94835200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:94833000-94835200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr10:94833000-94835200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:94833200-94834600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:94833200-94834800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:94833200-94835000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr10:94833200-94835200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:94833200-94835200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr10:94833200-94835200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr10:94833200-94836000	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr10:94833200-94836400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr10:94833400-94834600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
29	chr10:94833400-94834600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
30	chr10:94833400-94834800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:94833400-94835200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
32	chr10:94833600-94834600	Bivalent Enhancer	Fetal Intestine Large	intestine
33	chr10:94833600-94834800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
34	chr10:94833600-94834800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr10:94833600-94835000	Bivalent Enhancer	Left Ventricle	heart
36	chr10:94833600-94835200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
37	chr10:94833800-94834800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
38	chr10:94833800-94834800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
39	chr10:94833800-94834800	Bivalent/Poised TSS	NHEK	skin
40	chr10:94833800-94835000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr10:94833800-94835000	Bivalent Enhancer	Esophagus	oesophagus
42	chr10:94833800-94835000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
43	chr10:94833800-94835000	Bivalent Enhancer	NH-A	brain
44	chr10:94833800-94835200	Enhancers	Pancreas	Pancrea
45	chr10:94834000-94834600	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:94834000-94834600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
47	chr10:94834000-94834600	Bivalent Enhancer	Colon Smooth Muscle	Colon
48	chr10:94834000-94834600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
49	chr10:94834000-94834600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
50	chr10:94834000-94834800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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