Variant report

Variant	rs56280958
Chromosome Location	chr10:94816139-94816140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94815612..94818000-chr10:94823407..94825360,2	MCF-7	breast:
2	chr10:94809589..94812648-chr10:94815329..94819605,4	K562	blood:
3	chr10:94814471..94816710-chr10:94820982..94822511,2	K562	blood:

Variant related genes	Relation type
ENSG00000187553	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11814811	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17093824	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108061	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56699273	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57573488	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60312200	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60353767	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7073161	0.96[ASN][1000 genomes]
rs72558182	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74149194	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149197	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74149199	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74151805	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74151818	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151825	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976062	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
3	chr10:94787200-94817600	Weak transcription	Dnd41	blood
4	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
6	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
7	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
8	chr10:94795600-94817800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:94799800-94817000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:94800000-94818400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:94800800-94817600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94800800-94818000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:94801000-94816600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:94801400-94818800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:94801800-94820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:94803600-94817600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:94803600-94818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:94804000-94819800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:94804200-94821000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:94804600-94817800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:94806200-94816600	Weak transcription	HUVEC	blood vessel
23	chr10:94806200-94821000	Weak transcription	Gastric	stomach
24	chr10:94807800-94819800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:94808000-94821000	Weak transcription	Pancreas	Pancrea
26	chr10:94809000-94819400	Weak transcription	Spleen	Spleen
27	chr10:94809600-94817800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:94809800-94818600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:94811800-94825000	Weak transcription	HepG2	liver
30	chr10:94812000-94819200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:94812400-94817800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:94814600-94817800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:94815000-94816400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr10:94815400-94816200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:94815400-94817000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:94815800-94816800	Strong transcription	Primary B cells from cord blood	blood
37	chr10:94816000-94817600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:94816000-94819000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:94816000-94819600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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