Variant report

Variant	rs74151805
Chromosome Location	chr10:94793404-94793405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94792299..94795062-chr10:94819339..94821286,2	K562	blood:

Variant related genes	Relation type
ENSG00000187553	Chromatin interaction
ENSG00000226425	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11814811	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17093824	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17108061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280958	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56699273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57573488	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60312200	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60353767	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7073161	0.93[ASN][1000 genomes]
rs72558182	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74149194	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74149197	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74149199	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151818	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74151825	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976062	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
3	chr10:94773400-94800000	Weak transcription	Lung	lung
4	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
6	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
7	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
10	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:94787200-94817600	Weak transcription	Dnd41	blood
13	chr10:94787400-94799400	Weak transcription	Primary T cells from cord blood	blood
14	chr10:94787600-94799400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:94787800-94799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:94787800-94802000	Weak transcription	Primary B cells from cord blood	blood
17	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:94788000-94799400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
21	chr10:94788200-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:94788400-94811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:94788800-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:94790200-94797600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:94790400-94793600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:94790800-94799200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:94790800-94813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:94791000-94794000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:94791000-94794600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:94791000-94799200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:94791200-94794000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:94791200-94794000	Weak transcription	HMEC	breast
35	chr10:94791200-94798600	Weak transcription	Osteobl	bone
36	chr10:94791800-94793600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:94792000-94793600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr10:94792000-94794400	Enhancers	A549	lung
39	chr10:94792000-94795000	Enhancers	Rectal Smooth Muscle	rectum
40	chr10:94792200-94793600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr10:94792400-94795400	Enhancers	Fetal Intestine Large	intestine
42	chr10:94792600-94794000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:94792600-94794400	Enhancers	Liver	Liver
44	chr10:94792600-94795600	Enhancers	Fetal Intestine Small	intestine
45	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
46	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
47	chr10:94792800-94794000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:94793000-94793800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:94793000-94793800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:94793000-94795000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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