Variant report

Variant	rs3740379
Chromosome Location	chr10:94598393-94598394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94456016..94458040-chr10:94597968..94600497,2	K562	blood:
2	chr10:94594344..94597237-chr10:94597831..94600212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10509648	1.00[EUR][1000 genomes]
rs17093820	1.00[EUR][1000 genomes]
rs17107949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107967	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107977	1.00[EUR][1000 genomes]
rs17108019	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1806690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1986356	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933744	0.88[LWK][hapmap]
rs55929600	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57283335	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57988954	1.00[EUR][1000 genomes]
rs58753829	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60626109	1.00[EUR][1000 genomes]
rs61426198	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583849	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7069896	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74149160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149162	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149166	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149170	1.00[EUR][1000 genomes]
rs74149171	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149175	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74149183	1.00[EUR][1000 genomes]
rs74149184	1.00[EUR][1000 genomes]
rs74149188	1.00[EUR][1000 genomes]
rs74149191	1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
3	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:94593400-94598600	Weak transcription	Lung	lung
7	chr10:94594400-94598600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:94594600-94599000	Weak transcription	Ovary	ovary
9	chr10:94595400-94598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:94595400-94599000	Weak transcription	Osteobl	bone
11	chr10:94595400-94599200	Weak transcription	A549	lung
12	chr10:94595600-94599000	Weak transcription	Hela-S3	cervix
13	chr10:94595600-94599000	Weak transcription	NHLF	lung
14	chr10:94596000-94598800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:94596400-94598400	Genic enhancers	HUVEC	blood vessel
16	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
19	chr10:94597000-94599000	Genic enhancers	K562	blood
20	chr10:94597000-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:94597200-94598600	Strong transcription	Primary T cells from cord blood	blood
22	chr10:94597200-94599200	Enhancers	Placenta	Placenta
23	chr10:94597200-94599600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:94597200-94599800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:94597600-94598600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:94597600-94599000	Enhancers	HepG2	liver
28	chr10:94597800-94598800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:94598000-94598400	Enhancers	Pancreas	Pancrea
30	chr10:94598000-94599200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:94598000-94599600	Enhancers	Psoas Muscle	Psoas
32	chr10:94598200-94598800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:94598200-94599000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:94598200-94602800	Weak transcription	Dnd41	blood

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