Variant report

Variant	rs74149393
Chromosome Location	chr10:93997230-93997231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93992827..93994383-chr10:93997027..93998901,2	K562	blood:
2	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
3	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
4	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:

Variant related genes	Relation type
ENSG00000107864	Chromatin interaction
ENSG00000198060	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55735858	0.92[AFR][1000 genomes]
rs55936123	0.84[AFR][1000 genomes]
rs55937822	0.84[AFR][1000 genomes]
rs56132294	0.84[AFR][1000 genomes]
rs56990811	0.88[AFR][1000 genomes]
rs58369835	0.84[AFR][1000 genomes]
rs59024016	0.92[AFR][1000 genomes]
rs59443765	0.88[AFR][1000 genomes]
rs61493415	1.00[AFR][1000 genomes]
rs74149379	0.84[AFR][1000 genomes]
rs74149387	0.84[AFR][1000 genomes]
rs74149388	0.84[AFR][1000 genomes]
rs74149389	1.00[AFR][1000 genomes]
rs74149391	0.88[AFR][1000 genomes]
rs74149394	0.84[AFR][1000 genomes]
rs74149395	0.92[AFR][1000 genomes]
rs74149398	0.84[AFR][1000 genomes]
rs74151604	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
2	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:93969200-93997800	Weak transcription	Pancreas	Pancrea
4	chr10:93969200-93998600	Weak transcription	Lung	lung
5	chr10:93969600-93997800	Weak transcription	Esophagus	oesophagus
6	chr10:93971400-93997800	Weak transcription	Stomach Mucosa	stomach
7	chr10:93975400-93998000	Weak transcription	Colonic Mucosa	Colon
8	chr10:93976600-93999000	Weak transcription	Aorta	Aorta
9	chr10:93976800-93998800	Weak transcription	Gastric	stomach
10	chr10:93977000-93998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:93977600-93998000	Weak transcription	Primary B cells from cord blood	blood
12	chr10:93979400-93998600	Weak transcription	Primary T cells from cord blood	blood
13	chr10:93982600-93997800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:93982800-93997600	Weak transcription	Fetal Thymus	thymus
15	chr10:93983200-93998400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:93983200-93998400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93983400-93997800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:93983400-93998000	Weak transcription	HSMMtube	muscle
19	chr10:93983400-93998200	Weak transcription	HSMM	muscle
20	chr10:93983600-93998400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:93984400-93997400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:93985000-93998800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:93987000-93997800	Weak transcription	Ovary	ovary
24	chr10:93988200-93998600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:93988800-93997800	Weak transcription	Thymus	Thymus
26	chr10:93989400-93998600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:93989600-93997800	Weak transcription	Placenta	Placenta
28	chr10:93991400-93997800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:93991400-93997800	Weak transcription	Psoas Muscle	Psoas
30	chr10:93991400-93997800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:93991400-93997800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:93991400-93997800	Weak transcription	Spleen	Spleen
33	chr10:93991400-93998000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:93991400-93998000	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:93991400-93998000	Weak transcription	Fetal Stomach	stomach
36	chr10:93991400-93999000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:93991600-93997800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:93992600-93998600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:93992800-93997800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:93993200-93997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:93993200-93997800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:93993200-93998000	Weak transcription	HMEC	breast
43	chr10:93993400-93998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:93993600-93998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:93994600-93997800	Weak transcription	Left Ventricle	heart
46	chr10:93994600-93998000	Weak transcription	Fetal Intestine Small	intestine
47	chr10:93994800-93998600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:93995200-93997800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:93995800-93997800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr10:93996000-93997800	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links