Variant report

Variant	rs74149394
Chromosome Location	chr10:93998804-93998805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93992827..93994383-chr10:93997027..93998901,2	K562	blood:
2	chr10:93969866..93972797-chr10:93997351..93999951,2	MCF-7	breast:
3	chr1:116526409..116526909-chr10:93998123..93998915,2	Hela-S3	cervix:
4	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
5	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
6	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
7	chr10:93998311..94000738-chr10:94062996..94065016,2	K562	blood:
8	chr10:93997685..94001511-chr10:94048071..94053185,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55735858	0.84[AFR][1000 genomes]
rs55912917	0.91[AFR][1000 genomes]
rs55936123	1.00[AFR][1000 genomes]
rs55937822	1.00[AFR][1000 genomes]
rs56132294	1.00[AFR][1000 genomes]
rs56279438	0.91[AFR][1000 genomes]
rs56990811	0.95[AFR][1000 genomes]
rs58369835	1.00[AFR][1000 genomes]
rs59024016	0.84[AFR][1000 genomes]
rs59443765	0.95[AFR][1000 genomes]
rs61493415	0.84[AFR][1000 genomes]
rs74149361	0.91[AFR][1000 genomes]
rs74149367	0.91[AFR][1000 genomes]
rs74149374	0.91[AFR][1000 genomes]
rs74149376	0.91[AFR][1000 genomes]
rs74149379	1.00[AFR][1000 genomes]
rs74149387	1.00[AFR][1000 genomes]
rs74149388	1.00[AFR][1000 genomes]
rs74149389	0.84[AFR][1000 genomes]
rs74149391	0.81[AFR][1000 genomes]
rs74149393	0.84[AFR][1000 genomes]
rs74149395	0.91[AFR][1000 genomes]
rs74149397	0.91[AFR][1000 genomes]
rs74149398	1.00[AFR][1000 genomes]
rs74149399	0.87[AFR][1000 genomes]
rs74151604	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93976600-93999000	Weak transcription	Aorta	Aorta
2	chr10:93991400-93999000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:93997000-93999400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr10:93997000-94003400	Active TSS	Right Atrium	heart
5	chr10:93997200-93999200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:93997200-93999200	Active TSS	Fetal Heart	heart
7	chr10:93997400-93999200	Enhancers	Small Intestine	intestine
8	chr10:93997400-94001200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:93997400-94003200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93997600-93999000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:93997600-93999400	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr10:93997800-93999000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:93997800-93999000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:93997800-93999000	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr10:93997800-93999000	Enhancers	Spleen	Spleen
16	chr10:93997800-93999200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:93997800-93999200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:93997800-93999200	Flanking Active TSS	Fetal Brain Female	brain
19	chr10:93997800-93999200	Flanking Active TSS	Hela-S3	cervix
20	chr10:93997800-93999400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:93997800-93999400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:93997800-93999800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr10:93997800-94000000	Flanking Active TSS	NHEK	skin
24	chr10:93997800-94001200	Active TSS	Esophagus	oesophagus
25	chr10:93997800-94002400	Active TSS	Left Ventricle	heart
26	chr10:93998000-93999000	Flanking Active TSS	HepG2	liver
27	chr10:93998000-93999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:93998000-93999200	Active TSS	Colonic Mucosa	Colon
29	chr10:93998000-93999200	Enhancers	A549	lung
30	chr10:93998000-93999400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr10:93998000-94000200	Flanking Active TSS	HMEC	breast
32	chr10:93998000-94001000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr10:93998000-94001200	Active TSS	Pancreas	Pancrea
34	chr10:93998000-94001400	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr10:93998000-94003400	Active TSS	Psoas Muscle	Psoas
36	chr10:93998200-93999000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:93998200-93999000	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr10:93998200-93999000	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr10:93998200-93999000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:93998200-93999200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:93998200-93999200	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr10:93998200-93999200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr10:93998200-93999400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr10:93998200-93999400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr10:93998200-93999600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:93998200-93999800	Flanking Active TSS	GM12878-XiMat	blood
47	chr10:93998200-94000600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr10:93998200-94001200	Active TSS	Ovary	ovary
49	chr10:93998200-94003400	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr10:93998200-94003400	Active TSS	Right Ventricle	heart

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