Variant report

Variant	rs74149397
Chromosome Location	chr10:94004639-94004640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr10:94004567-94004810	GM12878	blood:	n/a	n/a
2	NFIC	chr10:94004473-94004972	GM12878	blood:	n/a	n/a
3	PAX5	chr10:94004520-94004869	GM12891	blood:	n/a	n/a
4	BHLHE40	chr10:94004586-94004874	GM12878	blood:	n/a	n/a
5	IRF4	chr10:94004461-94004965	GM12878	blood:	n/a	n/a
6	EP300	chr10:94004541-94004882	GM12878	blood:	n/a	n/a
7	ATF2	chr10:94004490-94004956	GM12878	blood:	n/a	n/a
8	STAT5A	chr10:94004506-94004860	GM12878	blood:	n/a	n/a
9	FOXM1	chr10:94004456-94004999	GM12878	blood:	n/a	n/a
10	MEF2A	chr10:94004451-94004889	GM12878	blood:	n/a	chr10:94004852-94004873
11	POLR2A	chr10:94004531-94004857	GM12891	blood:	n/a	n/a
12	STAT5A	chr10:94004493-94004894	GM12878	blood:	n/a	n/a
13	BCL11A	chr10:94004548-94004908	GM12878	blood:	n/a	n/a
14	BATF	chr10:94004498-94004893	GM12878	blood:	n/a	n/a
15	MEF2A	chr10:94004446-94004911	GM12878	blood:	n/a	chr10:94004852-94004873
16	PAX5	chr10:94004498-94004815	GM12878	blood:	n/a	n/a
17	BCL3	chr10:94004497-94004879	GM12878	blood:	n/a	n/a
18	BCL11A	chr10:94004549-94004844	GM12878	blood:	n/a	n/a
19	PML	chr10:94004569-94004769	GM12878	blood:	n/a	n/a
20	NFATC1	chr10:94004518-94004911	GM12878	blood:	n/a	n/a
21	ATF2	chr10:94004478-94004933	GM12878	blood:	n/a	n/a
22	TBL1XR1	chr10:94004490-94004933	GM12878	blood:	n/a	n/a
23	CUX1	chr10:94004528-94004892	GM12878	blood:	n/a	n/a
24	PAX5	chr10:94004551-94004840	GM12878	blood:	n/a	n/a
25	SP1	chr10:94004539-94004886	GM12878	blood:	n/a	chr10:94004784-94004805
26	CREB1	chr10:94004520-94004966	GM12878	blood:	n/a	n/a
27	BCLAF1	chr10:94004408-94004978	GM12878	blood:	n/a	n/a
28	MTA3	chr10:94004417-94004982	GM12878	blood:	n/a	n/a
29	PBX3	chr10:94004578-94004733	GM12878	blood:	n/a	n/a
30	POU2F2	chr10:94004521-94004865	GM12878	blood:	n/a	n/a
31	CEBPB	chr10:94004371-94005049	GM12878	blood:	n/a	n/a
32	PAX5	chr10:94004358-94004937	GM12878	blood:	n/a	n/a
33	BATF	chr10:94004589-94004859	GM12878	blood:	n/a	n/a
34	EBF1	chr10:94004496-94004824	GM12878	blood:	n/a	n/a
35	NR2F2	chr10:94004452-94004925	MCF-7	breast:	n/a	n/a
36	ZNF217	chr10:94004529-94004746	MCF-7	breast:	n/a	n/a
37	REST	chr10:94004552-94004845	GM12878	blood:	n/a	n/a
38	RUNX3	chr10:94004429-94004946	GM12878	blood:	n/a	n/a
39	NR2F2	chr10:94004491-94004889	MCF-7	breast:	n/a	n/a
40	EBF1	chr10:94004491-94004887	GM12878	blood:	n/a	n/a
41	NFYB	chr10:94004625-94004879	GM12878	blood:	n/a	chr10:94004785-94004795 chr10:94004783-94004797 chr10:94004783-94004798 chr10:94004783-94004798 chr10:94004782-94004794 chr10:94004785-94004795
42	MEF2C	chr10:94004428-94004979	GM12878	blood:	n/a	chr10:94004852-94004873
43	PML	chr10:94004469-94004860	GM12878	blood:	n/a	n/a
44	RUNX3	chr10:94004402-94004882	GM12878	blood:	n/a	n/a
45	ZNF384	chr10:94004592-94005051	GM12878	blood:	n/a	n/a
46	NFIC	chr10:94004379-94005031	GM12878	blood:	n/a	n/a
47	GATA3	chr10:94004369-94004947	MCF-7	breast:	n/a	n/a
48	CEBPB	chr10:94004615-94004869	GM12878	blood:	n/a	n/a
49	EP300	chr10:94004508-94004934	GM12878	blood:	n/a	n/a
50	MTA3	chr10:94004470-94004953	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94003805..94006713-chr10:94050079..94052421,2	K562	blood:

Variant related genes	Relation type
CPEB3	TF binding region
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55912917	0.83[AFR][1000 genomes]
rs55936123	0.91[AFR][1000 genomes]
rs55937822	0.91[AFR][1000 genomes]
rs56132294	0.91[AFR][1000 genomes]
rs56279438	0.83[AFR][1000 genomes]
rs56990811	0.87[AFR][1000 genomes]
rs58369835	0.91[AFR][1000 genomes]
rs59443765	0.87[AFR][1000 genomes]
rs74149361	0.83[AFR][1000 genomes]
rs74149367	0.83[AFR][1000 genomes]
rs74149374	0.83[AFR][1000 genomes]
rs74149376	0.83[AFR][1000 genomes]
rs74149379	0.91[AFR][1000 genomes]
rs74149387	0.91[AFR][1000 genomes]
rs74149388	0.91[AFR][1000 genomes]
rs74149394	0.91[AFR][1000 genomes]
rs74149395	0.83[AFR][1000 genomes]
rs74149398	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94000800-94024200	Weak transcription	Gastric	stomach
2	chr10:94003600-94008200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:94003600-94009800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:94004600-94004800	Flanking Active TSS	GM12878-XiMat	blood

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