Variant report

Variant	rs74149374
Chromosome Location	chr10:93854702-93854703
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55912917	1.00[AFR][1000 genomes]
rs55936123	0.91[AFR][1000 genomes]
rs55937822	0.91[AFR][1000 genomes]
rs56132294	0.91[AFR][1000 genomes]
rs56279438	1.00[AFR][1000 genomes]
rs56990811	0.87[AFR][1000 genomes]
rs58369835	0.91[AFR][1000 genomes]
rs59443765	0.87[AFR][1000 genomes]
rs74149361	1.00[AFR][1000 genomes]
rs74149367	1.00[AFR][1000 genomes]
rs74149376	1.00[AFR][1000 genomes]
rs74149379	0.91[AFR][1000 genomes]
rs74149387	0.91[AFR][1000 genomes]
rs74149388	0.91[AFR][1000 genomes]
rs74149394	0.91[AFR][1000 genomes]
rs74149395	0.83[AFR][1000 genomes]
rs74149397	0.83[AFR][1000 genomes]
rs74149398	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
2	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
3	chr10:93844000-93860800	Weak transcription	Psoas Muscle	Psoas
4	chr10:93845800-93856400	Weak transcription	Left Ventricle	heart
5	chr10:93847800-93861000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:93848200-93860800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:93848800-93856200	Weak transcription	Liver	Liver
8	chr10:93851800-93860800	Weak transcription	Brain Anterior Caudate	brain
9	chr10:93852000-93860800	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:93853400-93858000	Weak transcription	GM12878-XiMat	blood
11	chr10:93854400-93855000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:93854400-93855000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:93854400-93855000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:93854400-93855200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:93854400-93855200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:93854400-93855200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:93854400-93855200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:93854400-93855200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:93854600-93855000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:93854600-93855000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr10:93854600-93855000	Enhancers	Fetal Heart	heart
22	chr10:93854600-93855200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:93854600-93855200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:93854600-93855200	Enhancers	HUES64 Cell Line	embryonic stem cell

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