Variant report

Variant	rs74149395
Chromosome Location	chr10:94002252-94002253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93998891..94002756-chr10:94046633..94048810,3	MCF-7	breast:
2	chr10:94000034..94002806-chr10:94032423..94034711,2	MCF-7	breast:
3	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
4	chr10:94002101..94003735-chr10:94050527..94052941,2	K562	blood:
5	chr10:94000412..94002917-chr10:94049216..94050934,2	MCF-7	breast:
6	chr10:93992990..93994732-chr10:94001173..94002801,2	K562	blood:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs55735858	0.92[AFR][1000 genomes]
rs55912917	0.83[AFR][1000 genomes]
rs55936123	0.91[AFR][1000 genomes]
rs55937822	0.91[AFR][1000 genomes]
rs56132294	0.91[AFR][1000 genomes]
rs56279438	0.83[AFR][1000 genomes]
rs56990811	0.87[AFR][1000 genomes]
rs58369835	0.91[AFR][1000 genomes]
rs59024016	0.92[AFR][1000 genomes]
rs59443765	0.96[AFR][1000 genomes]
rs61493415	0.92[AFR][1000 genomes]
rs74149361	0.83[AFR][1000 genomes]
rs74149367	0.83[AFR][1000 genomes]
rs74149374	0.83[AFR][1000 genomes]
rs74149376	0.83[AFR][1000 genomes]
rs74149379	0.91[AFR][1000 genomes]
rs74149387	0.91[AFR][1000 genomes]
rs74149388	0.91[AFR][1000 genomes]
rs74149389	0.92[AFR][1000 genomes]
rs74149391	0.88[AFR][1000 genomes]
rs74149393	0.92[AFR][1000 genomes]
rs74149394	0.91[AFR][1000 genomes]
rs74149397	0.83[AFR][1000 genomes]
rs74149398	0.91[AFR][1000 genomes]
rs74151604	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93997000-94003400	Active TSS	Right Atrium	heart
2	chr10:93997400-94003200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:93997800-94002400	Active TSS	Left Ventricle	heart
4	chr10:93998000-94003400	Active TSS	Psoas Muscle	Psoas
5	chr10:93998200-94003400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr10:93998200-94003400	Active TSS	Right Ventricle	heart
7	chr10:93998800-94003400	Active TSS	Brain Angular Gyrus	brain
8	chr10:93999400-94003400	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr10:93999800-94003200	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr10:94000800-94024200	Weak transcription	Gastric	stomach
11	chr10:94001000-94002400	Flanking Active TSS	Brain Hippocampus Middle	brain
12	chr10:94001000-94003000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:94001000-94003000	Weak transcription	Colonic Mucosa	Colon
14	chr10:94001200-94002600	Weak transcription	Fetal Thymus	thymus
15	chr10:94001200-94002800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:94001200-94002800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94001200-94002800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:94001200-94002800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:94001200-94002800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:94001200-94002800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:94001200-94002800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:94001200-94002800	Weak transcription	Placenta	Placenta
23	chr10:94001200-94002800	Weak transcription	Ovary	ovary
24	chr10:94001200-94002800	Weak transcription	NH-A	brain
25	chr10:94001200-94003000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:94001400-94002400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:94001400-94002600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:94001400-94002600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:94001400-94002600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:94001400-94002600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:94001400-94002600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:94001400-94002600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:94001400-94002600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:94001400-94002600	Enhancers	Liver	Liver
35	chr10:94001400-94002600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:94001400-94002600	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr10:94001400-94002600	Weak transcription	Fetal Lung	lung
38	chr10:94001400-94002600	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:94001400-94002600	Enhancers	Rectal Smooth Muscle	rectum
40	chr10:94001400-94002600	Weak transcription	Thymus	Thymus
41	chr10:94001400-94002600	Enhancers	Dnd41	blood
42	chr10:94001400-94002600	Weak transcription	Hela-S3	cervix
43	chr10:94001400-94002600	Weak transcription	HMEC	breast
44	chr10:94001400-94002600	Weak transcription	HSMMtube	muscle
45	chr10:94001400-94002600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:94001400-94002800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:94001400-94002800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:94001400-94002800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:94001400-94002800	Weak transcription	Primary B cells from cord blood	blood
50	chr10:94001400-94002800	Weak transcription	Primary hematopoietic stem cells	blood

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