Variant report

Variant	rs56279438
Chromosome Location	chr10:93847332-93847333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93847240..93848138-chr10:94194463..94195433,3	MCF-7	breast:
2	chr10:93847007..93848850-chr10:93883133..93885140,2	MCF-7	breast:
3	chr10:93843200..93844774-chr10:93846231..93849117,2	MCF-7	breast:
4	chr10:93847221..93848633-chr10:94050307..94052486,7	MCF-7	breast:
5	chr10:93846195..93847705-chr10:94049440..94051742,2	K562	blood:
6	chr10:93847257..93847877-chr10:94051559..94052425,3	MCF-7	breast:
7	chr10:93847286..93847823-chr10:93976420..93976923,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107864	Chromatin interaction
ENSG00000198060	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55912917	1.00[AFR][1000 genomes]
rs55936123	0.91[AFR][1000 genomes]
rs55937822	0.91[AFR][1000 genomes]
rs56132294	0.91[AFR][1000 genomes]
rs56990811	0.87[AFR][1000 genomes]
rs58369835	0.91[AFR][1000 genomes]
rs59443765	0.87[AFR][1000 genomes]
rs74149361	1.00[AFR][1000 genomes]
rs74149367	1.00[AFR][1000 genomes]
rs74149374	1.00[AFR][1000 genomes]
rs74149376	1.00[AFR][1000 genomes]
rs74149379	0.91[AFR][1000 genomes]
rs74149387	0.91[AFR][1000 genomes]
rs74149388	0.91[AFR][1000 genomes]
rs74149394	0.91[AFR][1000 genomes]
rs74149395	0.83[AFR][1000 genomes]
rs74149397	0.83[AFR][1000 genomes]
rs74149398	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93836000-93853200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:93837400-93847600	Weak transcription	HUVEC	blood vessel
3	chr10:93837600-93847600	Weak transcription	Colonic Mucosa	Colon
4	chr10:93839000-93847600	Weak transcription	Placenta	Placenta
5	chr10:93841000-93847400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:93841000-93847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93841200-93847400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:93841200-93847400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:93841200-93847400	Weak transcription	Fetal Intestine Small	intestine
10	chr10:93841200-93847400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:93841200-93847600	Weak transcription	Fetal Intestine Large	intestine
12	chr10:93841200-93853800	Weak transcription	Pancreas	Pancrea
13	chr10:93841200-93872400	Weak transcription	Spleen	Spleen
14	chr10:93841200-93881600	Weak transcription	Esophagus	oesophagus
15	chr10:93841400-93847400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:93841400-93847600	Weak transcription	Adipose Nuclei	Adipose
17	chr10:93841400-93847800	Weak transcription	Primary B cells from cord blood	blood
18	chr10:93841600-93847600	Weak transcription	Brain Anterior Caudate	brain
19	chr10:93842800-93847400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:93842800-93848000	Weak transcription	Ovary	ovary
21	chr10:93843200-93847400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:93843200-93847400	Weak transcription	Right Atrium	heart
23	chr10:93843200-93847400	Weak transcription	Stomach Mucosa	stomach
24	chr10:93843200-93847600	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:93843200-93847800	Weak transcription	NHDF-Ad	bronchial
26	chr10:93843200-93848800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:93843400-93847400	Weak transcription	HepG2	liver
28	chr10:93843400-93847600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:93843600-93847400	Weak transcription	Liver	Liver
30	chr10:93843600-93847400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:93843600-93847400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:93843600-93847400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:93844000-93851200	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:93844000-93860800	Weak transcription	Psoas Muscle	Psoas
35	chr10:93845800-93856400	Weak transcription	Left Ventricle	heart
36	chr10:93846000-93848600	Enhancers	Fetal Heart	heart
37	chr10:93847200-93847600	Enhancers	Osteobl	bone
38	chr10:93847200-93848000	Enhancers	Hela-S3	cervix
39	chr10:93847200-93848200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr10:93847200-93848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:93847200-93848200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:93847200-93848200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr10:93847200-93848200	Enhancers	GM12878-XiMat	blood

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