Variant report

Variant	rs74153309
Chromosome Location	chr10:96111155-96111156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96110502..96112144-chr10:96114366..96116486,2	K562	blood:
2	chr10:96103719..96105879-chr10:96111129..96112668,2	K562	blood:
3	chr10:96110061..96112144-chr10:96114986..96116782,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56182539	1.00[AMR][1000 genomes]
rs56790972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57141993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58970354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072395	1.00[AMR][1000 genomes]
rs7078986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96075200-96112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
5	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:96081000-96118200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:96081200-96118400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:96081600-96117400	Strong transcription	NH-A	brain
9	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:96081800-96117400	Strong transcription	HSMM	muscle
12	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:96082000-96118400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:96082200-96113000	Weak transcription	Esophagus	oesophagus
16	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:96083000-96119800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:96083200-96118800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr10:96084400-96118200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:96085000-96121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:96085000-96122200	Weak transcription	Gastric	stomach
22	chr10:96086200-96121200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:96087600-96118600	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr10:96087600-96121200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:96088000-96118000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:96088200-96121800	Weak transcription	Aorta	Aorta
27	chr10:96089000-96120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:96089200-96119800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:96089600-96121000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:96089800-96117600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:96089800-96119000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:96089800-96119400	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:96089800-96119400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr10:96090400-96121000	Weak transcription	Fetal Heart	heart
35	chr10:96091000-96119800	Strong transcription	Liver	Liver
36	chr10:96092600-96115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:96096200-96112000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:96096200-96121000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:96096400-96117800	Strong transcription	HMEC	breast
40	chr10:96098600-96117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:96100000-96118000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:96100000-96121800	Weak transcription	Colonic Mucosa	Colon
43	chr10:96100200-96114000	Weak transcription	K562	blood
44	chr10:96100200-96116200	Weak transcription	Brain Substantia Nigra	brain
45	chr10:96101400-96118800	Strong transcription	A549	lung
46	chr10:96101600-96115000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr10:96101600-96118200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:96101800-96117400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:96102600-96113200	Strong transcription	Fetal Thymus	thymus
50	chr10:96102800-96121000	Weak transcription	Brain Angular Gyrus	brain

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