Variant report

Variant	rs56182539
Chromosome Location	chr10:96211859-96211860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56790972	1.00[AMR][1000 genomes]
rs57141993	1.00[AMR][1000 genomes]
rs58970354	1.00[AMR][1000 genomes]
rs59336338	0.90[ASN][1000 genomes]
rs61729390	1.00[AMR][1000 genomes]
rs7072395	1.00[AMR][1000 genomes]
rs7078986	1.00[AMR][1000 genomes]
rs7092498	1.00[AMR][1000 genomes]
rs74150886	1.00[AMR][1000 genomes]
rs74153303	1.00[AMR][1000 genomes]
rs74153307	1.00[AMR][1000 genomes]
rs74153309	1.00[AMR][1000 genomes]
rs74153311	1.00[AMR][1000 genomes]
rs74153312	1.00[AMR][1000 genomes]
rs74153316	1.00[AMR][1000 genomes]
rs74153317	1.00[AMR][1000 genomes]
rs7894130	1.00[AMR][1000 genomes]
rs7902578	1.00[AMR][1000 genomes]
rs7910033	1.00[AMR][1000 genomes]
rs7910469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
4	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
5	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
7	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
8	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
9	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:96203000-96218600	Weak transcription	Ovary	ovary
11	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:96203200-96215400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:96203400-96212000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:96203800-96217200	Weak transcription	HepG2	liver
17	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:96204000-96221000	Weak transcription	Liver	Liver
19	chr10:96204200-96212000	Weak transcription	Brain Anterior Caudate	brain
20	chr10:96204200-96213400	Weak transcription	A549	lung
21	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:96206200-96218000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:96207600-96213200	Weak transcription	HUVEC	blood vessel
24	chr10:96209000-96218400	Weak transcription	Lung	lung
25	chr10:96209400-96213000	Strong transcription	HSMM	muscle
26	chr10:96209600-96219600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:96210200-96215800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:96210200-96248800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:96210600-96215200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:96211200-96212200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:96211200-96212200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:96211200-96212200	ZNF genes & repeats	Fetal Heart	heart
33	chr10:96211200-96212600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:96211200-96212800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr10:96211400-96212200	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr10:96211400-96212400	ZNF genes & repeats	Fetal Lung	lung
37	chr10:96211400-96212600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr10:96211400-96218200	Weak transcription	Fetal Intestine Large	intestine
39	chr10:96211600-96212600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:96211600-96215800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:96211600-96218000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:96211600-96218600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:96211600-96220800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:96211600-96224000	Weak transcription	Psoas Muscle	Psoas
45	chr10:96211600-96292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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