Variant report

Variant	rs74150886
Chromosome Location	chr10:96424010-96424011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11568730	1.00[AMR][1000 genomes]
rs1409654	1.00[AMR][1000 genomes]
rs17878649	1.00[AMR][1000 genomes]
rs2296679	1.00[AMR][1000 genomes]
rs2296682	1.00[AMR][1000 genomes]
rs2296684	1.00[AMR][1000 genomes]
rs41291550	1.00[AMR][1000 genomes]
rs55674471	1.00[AMR][1000 genomes]
rs56061138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56173254	1.00[AMR][1000 genomes]
rs56182539	1.00[AMR][1000 genomes]
rs58097738	1.00[AMR][1000 genomes]
rs58589214	1.00[AMR][1000 genomes]
rs58955938	1.00[AMR][1000 genomes]
rs59750131	1.00[AMR][1000 genomes]
rs60571756	1.00[AMR][1000 genomes]
rs61459416	1.00[AMR][1000 genomes]
rs61886194	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072395	1.00[AMR][1000 genomes]
rs7078494	1.00[AMR][1000 genomes]
rs7079533	1.00[AMR][1000 genomes]
rs7082335	1.00[AMR][1000 genomes]
rs7090811	1.00[AMR][1000 genomes]
rs7092498	1.00[AMR][1000 genomes]
rs7095131	1.00[AMR][1000 genomes]
rs7095497	1.00[AMR][1000 genomes]
rs74152313	1.00[AMR][1000 genomes]
rs74152314	1.00[AMR][1000 genomes]
rs74152332	1.00[AMR][1000 genomes]
rs74152337	1.00[AMR][1000 genomes]
rs74152343	1.00[AMR][1000 genomes]
rs74152344	1.00[AMR][1000 genomes]
rs74152346	1.00[AMR][1000 genomes]
rs74154111	1.00[AMR][1000 genomes]
rs7894130	1.00[AMR][1000 genomes]
rs7894712	1.00[AMR][1000 genomes]
rs7902578	1.00[AMR][1000 genomes]
rs7910033	1.00[AMR][1000 genomes]
rs7910469	1.00[AMR][1000 genomes]
rs7912667	1.00[AMR][1000 genomes]
rs7917953	1.00[AMR][1000 genomes]
rs7923806	1.00[AMR][1000 genomes]
rs9663206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1040106	chr10:96405296-96514994	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1040976	chr10:96405296-96516804	Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv551954	chr10:96405329-96521249	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1049225	chr10:96405502-96516804	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052478	chr10:96406313-96516804	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1037516	chr10:96407511-96516804	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1049341	chr10:96416809-96471236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96423200-96424200	Weak transcription	Gastric	stomach
2	chr10:96423600-96426200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:96423800-96424200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:96424000-96426200	Weak transcription	Stomach Mucosa	stomach

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