Variant report

Variant	rs7910033
Chromosome Location	chr10:96403148-96403149
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11568730	1.00[AMR][1000 genomes]
rs1409654	1.00[AMR][1000 genomes]
rs17878649	1.00[AMR][1000 genomes]
rs2296679	1.00[AMR][1000 genomes]
rs2296682	1.00[AMR][1000 genomes]
rs2296684	1.00[AMR][1000 genomes]
rs41291550	1.00[AMR][1000 genomes]
rs55674471	1.00[AMR][1000 genomes]
rs56061138	1.00[AMR][1000 genomes]
rs56173254	1.00[AMR][1000 genomes]
rs56182539	1.00[AMR][1000 genomes]
rs58097738	1.00[AMR][1000 genomes]
rs58589214	1.00[AMR][1000 genomes]
rs58955938	1.00[AMR][1000 genomes]
rs59750131	1.00[AMR][1000 genomes]
rs60571756	1.00[AMR][1000 genomes]
rs61459416	1.00[AMR][1000 genomes]
rs61886194	1.00[AMR][1000 genomes]
rs7072395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078494	1.00[AMR][1000 genomes]
rs7079533	1.00[AMR][1000 genomes]
rs7082335	1.00[AMR][1000 genomes]
rs7090811	1.00[AMR][1000 genomes]
rs7092498	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095131	1.00[AMR][1000 genomes]
rs7095497	1.00[AMR][1000 genomes]
rs74150886	1.00[AMR][1000 genomes]
rs74152313	1.00[AMR][1000 genomes]
rs74152314	1.00[AMR][1000 genomes]
rs74152332	1.00[AMR][1000 genomes]
rs74152337	1.00[AMR][1000 genomes]
rs74152343	1.00[AMR][1000 genomes]
rs74152344	1.00[AMR][1000 genomes]
rs74152346	1.00[AMR][1000 genomes]
rs7894130	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894712	1.00[AMR][1000 genomes]
rs7902578	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910469	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7912667	1.00[AMR][1000 genomes]
rs7917953	1.00[AMR][1000 genomes]
rs7923806	1.00[AMR][1000 genomes]
rs9663206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96393800-96403400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:96400400-96407200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links