Variant report

Variant	rs7902578
Chromosome Location	chr10:96366321-96366322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96364298..96366662-chr10:96373038..96375239,3	K562	blood:
2	chr10:96361276..96363371-chr10:96363793..96366493,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11568730	1.00[AMR][1000 genomes]
rs1409654	1.00[AMR][1000 genomes]
rs17878649	1.00[AMR][1000 genomes]
rs2296679	1.00[AMR][1000 genomes]
rs2296682	1.00[AMR][1000 genomes]
rs2296684	1.00[AMR][1000 genomes]
rs41291550	1.00[AMR][1000 genomes]
rs55674471	1.00[AMR][1000 genomes]
rs56173254	1.00[AMR][1000 genomes]
rs56182539	1.00[AMR][1000 genomes]
rs58097738	1.00[AMR][1000 genomes]
rs58589214	1.00[AMR][1000 genomes]
rs58955938	1.00[AMR][1000 genomes]
rs59750131	1.00[AMR][1000 genomes]
rs60571756	1.00[AMR][1000 genomes]
rs61459416	1.00[AMR][1000 genomes]
rs61886194	1.00[AMR][1000 genomes]
rs7072395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078494	1.00[AMR][1000 genomes]
rs7082335	1.00[AMR][1000 genomes]
rs7090811	1.00[AMR][1000 genomes]
rs7092498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095131	1.00[AMR][1000 genomes]
rs7095497	1.00[AMR][1000 genomes]
rs74150886	1.00[AMR][1000 genomes]
rs74152313	1.00[AMR][1000 genomes]
rs74152314	1.00[AMR][1000 genomes]
rs74152332	1.00[AMR][1000 genomes]
rs74152337	1.00[AMR][1000 genomes]
rs74152343	1.00[AMR][1000 genomes]
rs74152344	1.00[AMR][1000 genomes]
rs74152346	1.00[AMR][1000 genomes]
rs74153316	1.00[AMR][1000 genomes]
rs74153317	1.00[AMR][1000 genomes]
rs7894130	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894712	1.00[AMR][1000 genomes]
rs7910033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910469	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7912667	1.00[AMR][1000 genomes]
rs7917953	1.00[AMR][1000 genomes]
rs7923806	1.00[AMR][1000 genomes]
rs9663206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:96306400-96371000	Weak transcription	Ovary	ovary
4	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
6	chr10:96307000-96375000	Weak transcription	Osteobl	bone
7	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
8	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
9	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:96312800-96372200	Strong transcription	Dnd41	blood
14	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
16	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
17	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:96325800-96376000	Weak transcription	NHLF	lung
22	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
23	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:96346600-96372600	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr10:96347200-96368000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:96348000-96369600	Weak transcription	Fetal Heart	heart
29	chr10:96348600-96371400	Weak transcription	NHEK	skin
30	chr10:96349200-96371000	Weak transcription	Primary B cells from cord blood	blood
31	chr10:96350600-96368000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:96350600-96371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:96351400-96371000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:96354800-96376600	Weak transcription	Fetal Intestine Large	intestine
35	chr10:96355000-96375600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:96355200-96369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:96356200-96366400	Weak transcription	K562	blood
38	chr10:96357000-96376200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:96357800-96369400	Weak transcription	Thymus	Thymus
40	chr10:96357800-96372400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:96358200-96371600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:96358400-96377200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:96359200-96373200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:96359200-96382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:96359400-96367200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr10:96359400-96369000	Weak transcription	Fetal Lung	lung
47	chr10:96360000-96371400	Weak transcription	HepG2	liver
48	chr10:96360000-96373800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:96360400-96372400	Strong transcription	A549	lung
50	chr10:96361200-96367800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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