Variant report

Variant	rs61886194
Chromosome Location	chr10:54478816-54478817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11568730	1.00[AMR][1000 genomes]
rs11568732	0.90[AFR][1000 genomes]
rs1409654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17878649	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17879918	1.00[AMR][1000 genomes]
rs17882572	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17886522	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2296679	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2296682	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2296684	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3862008	0.84[AFR][1000 genomes]
rs41291550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4304697	0.90[AFR][1000 genomes]
rs4986893	0.93[ASN][1000 genomes]
rs55674471	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56061138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56173254	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58097738	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58589214	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58955938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59750131	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60571756	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61050284	0.93[ASN][1000 genomes]
rs61459416	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7072395	1.00[AMR][1000 genomes]
rs7076598	0.87[ASN][1000 genomes]
rs7078494	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7079533	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7082335	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7090811	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7092498	1.00[AMR][1000 genomes]
rs7095131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7095497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7101258	0.93[ASN][1000 genomes]
rs74150886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74152313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74152314	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74152315	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74152332	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74152337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74152343	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74152344	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74152346	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74154111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7894130	1.00[AMR][1000 genomes]
rs7894712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7895106	0.81[ASN][1000 genomes]
rs7902578	1.00[AMR][1000 genomes]
rs7910033	1.00[AMR][1000 genomes]
rs7910469	1.00[AMR][1000 genomes]
rs7912667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7917617	0.81[AFR][1000 genomes]
rs7917953	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7923806	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9663112	0.90[AFR][1000 genomes]
rs9663206	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895401	chr10:54231238-54530636	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54478400-54481600	Weak transcription	Primary hematopoietic stem cells	blood

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