Variant report

Variant	rs74153317
Chromosome Location	chr10:96128342-96128343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56182539	1.00[AMR][1000 genomes]
rs56790972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57141993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58970354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072395	1.00[AMR][1000 genomes]
rs7078986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7092498	1.00[AMR][1000 genomes]
rs74153303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74153316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894130	1.00[AMR][1000 genomes]
rs7902578	1.00[AMR][1000 genomes]
rs7910469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96123400-96128400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:96127200-96129800	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:96128000-96128400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:96128000-96129800	Enhancers	Brain Hippocampus Middle	brain
5	chr10:96128000-96130000	Enhancers	Brain Angular Gyrus	brain
6	chr10:96128000-96130200	Enhancers	Brain Substantia Nigra	brain
7	chr10:96128000-96132200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr10:96128200-96128800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:96128200-96129800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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