Variant report

Variant	rs742378
Chromosome Location	chr6:143718024-143718025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143707751..143710016-chr6:143717710..143720535,2	MCF-7	breast:
2	chr6:143709970..143711543-chr6:143717144..143719561,2	K562	blood:
3	chr6:143712251..143714168-chr6:143716373..143718151,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11962852	1.00[CEU][hapmap]
rs17072445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs28549222	1.00[EUR][1000 genomes]
rs6911274	1.00[EUR][1000 genomes]
rs6942294	1.00[EUR][1000 genomes]
rs73578682	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7742447	1.00[EUR][1000 genomes]
rs7758219	1.00[EUR][1000 genomes]
rs7760371	1.00[EUR][1000 genomes]
rs9321903	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9484739	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484740	1.00[EUR][1000 genomes]
rs9484741	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496552	1.00[CHB][hapmap]
rs9496603	0.81[EUR][1000 genomes]
rs9496607	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143716200-143722400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:143716800-143723600	Enhancers	HMEC	breast
4	chr6:143717000-143718200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:143717000-143720000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:143717000-143723600	Enhancers	NHEK	skin
7	chr6:143717000-143724200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143717200-143718200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:143717200-143718200	Flanking Active TSS	HepG2	liver
10	chr6:143717200-143720400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143717400-143718400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:143717400-143719200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:143717400-143719400	Enhancers	Hela-S3	cervix
14	chr6:143717600-143718400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:143717600-143718600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:143717600-143718800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:143717600-143719000	Enhancers	Brain Angular Gyrus	brain
18	chr6:143717600-143719000	Enhancers	Fetal Heart	heart
19	chr6:143717600-143719200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:143717600-143719200	Enhancers	Small Intestine	intestine
21	chr6:143717600-143719200	Enhancers	A549	lung
22	chr6:143717600-143719400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:143717600-143719400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:143717600-143719400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:143717600-143719400	Enhancers	Fetal Intestine Large	intestine
26	chr6:143717600-143719400	Enhancers	Stomach Mucosa	stomach
27	chr6:143717600-143719400	Enhancers	HSMM	muscle
28	chr6:143717600-143719600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:143717600-143720600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:143717600-143720600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:143717600-143723000	Enhancers	Fetal Muscle Leg	muscle
32	chr6:143717800-143718400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:143717800-143719000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:143717800-143719200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:143717800-143719400	Enhancers	Fetal Intestine Small	intestine
36	chr6:143717800-143720000	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:143717800-143720600	Enhancers	Placenta	Placenta
38	chr6:143718000-143718200	Enhancers	Liver	Liver
39	chr6:143718000-143718200	Enhancers	Brain Hippocampus Middle	brain
40	chr6:143718000-143718400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:143718000-143718400	Enhancers	NH-A	brain
42	chr6:143718000-143718600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:143718000-143718600	Enhancers	Fetal Kidney	kidney
44	chr6:143718000-143718800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:143718000-143719000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:143718000-143719000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr6:143718000-143719000	Enhancers	Fetal Lung	lung
48	chr6:143718000-143719000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:143718000-143719200	Enhancers	HSMMtube	muscle
50	chr6:143718000-143719400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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