Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10042959	0.84[EUR][1000 genomes]
rs4129892	0.84[EUR][1000 genomes]
rs4130605	0.84[EUR][1000 genomes]
rs4130606	0.84[EUR][1000 genomes]
rs4242258	0.84[EUR][1000 genomes]
rs4869466	0.84[EUR][1000 genomes]
rs4869619	0.84[EUR][1000 genomes]
rs4869631	0.80[EUR][1000 genomes]
rs62353696	0.84[EUR][1000 genomes]
rs6451214	0.84[EUR][1000 genomes]
rs6451215	0.84[EUR][1000 genomes]
rs6451216	0.84[EUR][1000 genomes]
rs6876874	0.84[EUR][1000 genomes]
rs6888367	0.84[EUR][1000 genomes]
rs6888729	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6893048	0.84[EUR][1000 genomes]
rs6895801	0.84[EUR][1000 genomes]
rs6896356	0.84[EUR][1000 genomes]
rs7380557	0.84[EUR][1000 genomes]
rs7380587	0.84[EUR][1000 genomes]
rs7447258	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7736028	0.84[EUR][1000 genomes]
rs931554	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35755000-35758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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