Variant report

Variant	rs6888729
Chromosome Location	chr5:35766181-35766182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10042959	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10043875	0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2361391	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs2361392	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs4129892	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[EUR][1000 genomes]
rs4130605	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4130606	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4131256	0.81[CHB][hapmap]
rs4242258	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4869466	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4869619	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4869631	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57588520	0.92[EUR][1000 genomes]
rs62353696	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6451212	0.81[CHB][hapmap];0.80[AMR][1000 genomes]
rs6451214	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6451215	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6451216	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6876874	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6888367	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6893048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6895801	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6896356	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7380557	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7380587	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7443019	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7447258	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7448303	0.81[CHB][hapmap]
rs7710187	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7736028	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs931554	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35763000-35766200	Weak transcription	Osteobl	bone
2	chr5:35764800-35767000	Enhancers	Hela-S3	cervix
3	chr5:35765800-35766400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:35766000-35770000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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