Variant report

Variant	rs6451212
Chromosome Location	chr5:35729642-35729643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10042959	0.91[AMR][1000 genomes]
rs10043875	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11957765	1.00[CEU][hapmap]
rs12519864	0.82[CEU][hapmap];1.00[TSI][hapmap]
rs12655830	1.00[CEU][hapmap]
rs16902391	0.82[CEU][hapmap];1.00[TSI][hapmap]
rs16902406	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2361391	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs2361392	0.81[CHB][hapmap];1.00[GIH][hapmap]
rs4072772	1.00[CEU][hapmap]
rs4128903	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129892	0.90[CHB][hapmap]
rs4130605	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs4130606	0.91[AMR][1000 genomes]
rs4131256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242258	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes]
rs4869466	0.91[AMR][1000 genomes]
rs4869619	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes]
rs4869631	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62353696	0.91[AMR][1000 genomes]
rs6451214	0.91[AMR][1000 genomes]
rs6451215	0.91[AMR][1000 genomes]
rs6451216	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes]
rs6876874	0.91[AMR][1000 genomes]
rs6888367	0.90[CHB][hapmap];0.91[AMR][1000 genomes]
rs6888729	0.81[CHB][hapmap];0.80[AMR][1000 genomes]
rs6893048	0.90[CHB][hapmap];0.91[AMR][1000 genomes]
rs6895801	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes]
rs6896356	0.91[AMR][1000 genomes]
rs6897787	0.89[LWK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7380557	0.91[AMR][1000 genomes]
rs7380587	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes]
rs7443130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7444163	0.84[AFR][1000 genomes]
rs7444574	1.00[CEU][hapmap]
rs7447258	0.81[CHB][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes]
rs7448303	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7709463	0.84[AFR][1000 genomes]
rs7710187	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7736028	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes]
rs9292602	1.00[GIH][hapmap]
rs931554	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35725200-35729800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35727400-35734600	Weak transcription	Lung	lung
3	chr5:35729600-35729800	ZNF genes & repeats	Pancreas	Pancrea

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