Variant report

Variant	rs4131256
Chromosome Location	chr5:35727274-35727275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35724096..35725968-chr5:35726687..35728607,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10042959	0.87[AMR][1000 genomes]
rs10043875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11957765	1.00[CEU][hapmap]
rs12519864	0.82[CEU][hapmap]
rs12655830	1.00[CEU][hapmap]
rs16902391	0.82[CEU][hapmap]
rs16902406	1.00[CEU][hapmap]
rs2361391	0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs2361392	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs4072772	1.00[CEU][hapmap]
rs4128903	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129892	0.90[CHB][hapmap]
rs4130605	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs4130606	0.87[AMR][1000 genomes]
rs4130679	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs4242258	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs4869466	0.87[AMR][1000 genomes]
rs4869619	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs4869631	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs57588520	0.81[EUR][1000 genomes]
rs62353696	0.87[AMR][1000 genomes]
rs6451212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451214	0.87[AMR][1000 genomes]
rs6451215	0.87[AMR][1000 genomes]
rs6451216	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs6876874	0.87[AMR][1000 genomes]
rs6888367	0.90[CHB][hapmap];0.87[AMR][1000 genomes]
rs6888729	0.81[CHB][hapmap]
rs6893048	0.90[CHB][hapmap];0.87[AMR][1000 genomes]
rs6895801	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs6896356	0.87[AMR][1000 genomes]
rs7380557	0.87[AMR][1000 genomes]
rs7380587	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs7443130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]
rs7444574	1.00[CEU][hapmap]
rs7447258	0.81[CHB][hapmap]
rs7448303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]
rs7710187	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7736028	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs931554	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35725200-35729800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35727200-35728000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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