Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10043875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1013154	1.00[CEU][hapmap]
rs10805608	1.00[CEU][hapmap]
rs10941256	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs2361391	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs2361392	0.81[CHB][hapmap]
rs4128903	0.95[ASN][1000 genomes]
rs4129892	0.90[CHB][hapmap]
rs4130605	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4131256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]
rs4242258	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4869619	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4869631	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6451212	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6451216	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6888367	0.90[CHB][hapmap]
rs6888729	0.81[CHB][hapmap]
rs6893048	0.90[CHB][hapmap]
rs6894157	0.80[CEU][hapmap]
rs6895801	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7380587	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7443130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7447258	0.81[CHB][hapmap]
rs7705331	1.00[CEU][hapmap]
rs7710284	0.80[CEU][hapmap]
rs7736028	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs903392	1.00[CEU][hapmap]
rs931554	0.90[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7448303	CXCR3	trans	lymphoblastoid	seeQTL
rs7448303	UGT3A2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35721800-35723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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