Variant report

Variant	rs2361391
Chromosome Location	chr5:35793042-35793043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10042959	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043875	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs2361392	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4128903	0.81[EUR][1000 genomes]
rs4129892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130606	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131256	0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4242258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869466	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57588520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62353696	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6451212	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs6451214	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451215	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6876874	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6888367	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6888729	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs6893048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6896356	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7380557	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7380587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7443130	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7447258	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7448303	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7710187	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9292602	1.00[GIH][hapmap]
rs931554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35787400-35793200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr5:35788400-35796800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:35788800-35796800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35789400-35793400	Weak transcription	Thymus	Thymus
6	chr5:35789400-35793600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:35789400-35794000	Weak transcription	Dnd41	blood
8	chr5:35789800-35793200	Weak transcription	Fetal Thymus	thymus
9	chr5:35790800-35796800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:35791000-35799600	Weak transcription	Osteobl	bone
11	chr5:35791200-35794600	Weak transcription	HSMM	muscle
12	chr5:35791200-35797000	Weak transcription	NHDF-Ad	bronchial
13	chr5:35792200-35796800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr5:35792600-35797000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:35792800-35793200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr5:35792800-35793400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:35792800-35793600	Enhancers	Fetal Intestine Large	intestine
18	chr5:35792800-35796800	Enhancers	Primary T cells from cord blood	blood
19	chr5:35792800-35796800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr5:35793000-35794600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:35793000-35794600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:35793000-35796800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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