Variant report

Variant	rs931554
Chromosome Location	chr5:35781788-35781789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10042959	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043875	0.90[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2361391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361392	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs4128903	0.87[AMR][1000 genomes]
rs4129892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130606	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4131256	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes]
rs4242258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869466	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57588520	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62353696	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6451212	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6451214	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451215	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6876874	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6888367	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6888729	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6893048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6896356	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6897787	0.87[YRI][hapmap]
rs7380557	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7380587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7443019	0.80[EUR][1000 genomes]
rs7443130	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7447258	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7448303	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7710187	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7736028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35778000-35782200	Enhancers	Fetal Thymus	thymus
3	chr5:35778000-35787800	Enhancers	Dnd41	blood
4	chr5:35778800-35784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:35779400-35782200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:35779400-35782800	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr5:35780000-35782200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr5:35780600-35782200	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:35780600-35782200	Enhancers	HSMM	muscle
10	chr5:35780600-35782600	Enhancers	Osteobl	bone
11	chr5:35780600-35783400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:35780800-35782200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:35780800-35782200	Enhancers	NHDF-Ad	bronchial
14	chr5:35780800-35782400	Enhancers	HUVEC	blood vessel
15	chr5:35781000-35781800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:35781000-35782400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:35781000-35784600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:35781200-35781800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:35781200-35782000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:35781200-35782400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:35781200-35782400	Enhancers	Thymus	Thymus
22	chr5:35781400-35781800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:35781400-35781800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr5:35781400-35781800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr5:35781400-35781800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr5:35781400-35781800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr5:35781400-35781800	Enhancers	HSMMtube	muscle
28	chr5:35781400-35782000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr5:35781400-35782000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:35781400-35782200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:35781400-35782200	Enhancers	Fetal Muscle Leg	muscle
32	chr5:35781400-35782200	Enhancers	Stomach Smooth Muscle	stomach
33	chr5:35781400-35782400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr5:35781400-35782400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:35781400-35782400	Enhancers	Fetal Kidney	kidney
36	chr5:35781400-35782400	Enhancers	Fetal Lung	lung
37	chr5:35781400-35782600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:35781600-35781800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr5:35781600-35781800	Flanking Active TSS	NHLF	lung
40	chr5:35781600-35782200	Enhancers	Brain Hippocampus Middle	brain
41	chr5:35781600-35782200	Enhancers	Left Ventricle	heart
42	chr5:35781600-35782400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr5:35781600-35782400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links