Variant report

Variant	rs10043875
Chromosome Location	chr5:35739960-35739961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10042959	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11957765	1.00[CEU][hapmap]
rs12519864	0.82[CEU][hapmap];0.90[TSI][hapmap]
rs12655830	1.00[CEU][hapmap]
rs16902391	0.82[CEU][hapmap];0.90[TSI][hapmap]
rs16902406	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs2361391	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs2361392	0.81[CHB][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs4072772	1.00[CEU][hapmap]
rs4128903	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4129892	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs4130605	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4130606	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4131256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4242258	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869466	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869619	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869631	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57588520	0.85[EUR][1000 genomes]
rs62353696	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6451212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6451214	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6451215	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6451216	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6876874	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6888367	0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6888729	0.81[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6893048	0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6895801	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6896356	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6897787	0.85[LWK][hapmap];0.91[YRI][hapmap]
rs7380557	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7380587	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7443130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7444574	1.00[CEU][hapmap]
rs7447258	0.81[CHB][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7448303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7710187	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7736028	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292602	1.00[GIH][hapmap]
rs931554	0.90[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737000-35741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:35737200-35740600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney
4	chr5:35739600-35741600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:35739800-35740600	Enhancers	HUVEC	blood vessel
6	chr5:35739800-35741400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:35739800-35742600	Weak transcription	Pancreas	Pancrea

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