Variant report

Variant	rs2361392
Chromosome Location	chr5:35799275-35799276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10042959	0.86[EUR][1000 genomes]
rs10043875	0.81[CHB][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs2361391	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4128903	0.81[EUR][1000 genomes]
rs4129892	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs4130605	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs4130606	0.86[EUR][1000 genomes]
rs4131256	0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs4242258	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs4869466	0.86[EUR][1000 genomes]
rs4869619	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs4869631	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs57588520	0.92[EUR][1000 genomes]
rs62353696	0.86[EUR][1000 genomes]
rs6451212	0.81[CHB][hapmap];1.00[GIH][hapmap]
rs6451214	0.86[EUR][1000 genomes]
rs6451215	0.86[EUR][1000 genomes]
rs6451216	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs6876874	0.86[EUR][1000 genomes]
rs6888367	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs6888729	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs6893048	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs6895801	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs6896356	0.86[EUR][1000 genomes]
rs7380557	0.86[EUR][1000 genomes]
rs7380587	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs7447258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs7448303	0.81[CHB][hapmap]
rs7710187	0.90[EUR][1000 genomes]
rs7736028	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs9292602	1.00[GIH][hapmap]
rs931554	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35791000-35799600	Weak transcription	Osteobl	bone
3	chr5:35795200-35802600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:35796000-35800000	Weak transcription	HSMMtube	muscle
5	chr5:35797400-35799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:35797400-35799600	Weak transcription	NHDF-Ad	bronchial
7	chr5:35797400-35803200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:35797600-35802800	Weak transcription	Fetal Brain Male	brain
9	chr5:35797600-35803000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:35797600-35803000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:35797800-35799600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:35797800-35802800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:35797800-35804200	Weak transcription	Pancreas	Pancrea
14	chr5:35798000-35802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:35798000-35803000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:35798200-35802400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:35798200-35802400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:35798200-35802800	Weak transcription	Dnd41	blood
19	chr5:35798400-35799400	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:35798600-35801400	Weak transcription	Fetal Thymus	thymus
21	chr5:35798600-35802200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:35798600-35802400	Weak transcription	Thymus	Thymus
23	chr5:35798600-35802800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:35798600-35803000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:35799000-35802000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:35799200-35799400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:35799200-35799400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:35799200-35799600	Enhancers	Primary T cells from cord blood	blood
29	chr5:35799200-35802600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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