Variant report
| Variant | rs7443130 |
|---|---|
| Chromosome Location | chr5:35726248-35726249 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35724641..35726899-chr5:35731483..35734096,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10043875 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1013154 | 1.00[CEU][hapmap] |
| rs10805608 | 1.00[CEU][hapmap] |
| rs10941256 | 1.00[CEU][hapmap] |
| rs2361391 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs4128903 | 0.95[ASN][1000 genomes] |
| rs4129892 | 0.89[CHB][hapmap] |
| rs4130605 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs4131256 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes] |
| rs4242258 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs4869619 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs4869631 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs6451212 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs6451216 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs6888367 | 0.89[CHB][hapmap] |
| rs6893048 | 0.88[CHB][hapmap] |
| rs6894157 | 0.80[CEU][hapmap] |
| rs6895801 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs7380587 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs7448303 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7705331 | 1.00[CEU][hapmap] |
| rs7710284 | 0.80[CEU][hapmap] |
| rs7736028 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs903392 | 1.00[CEU][hapmap] |
| rs931554 | 0.88[CHB][hapmap];0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35725200-35729800 | Weak transcription | Brain Anterior Caudate | brain |
