Variant report

Variant	rs745091
Chromosome Location	chr6:133658299-133658300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1336520	0.88[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs34751763	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62428663	0.96[ASN][1000 genomes]
rs62428664	0.96[ASN][1000 genomes]
rs62428665	0.96[ASN][1000 genomes]
rs62428666	0.94[ASN][1000 genomes]
rs62428668	0.85[ASN][1000 genomes]
rs62428724	0.85[ASN][1000 genomes]
rs62428725	0.83[ASN][1000 genomes]
rs62428726	0.83[ASN][1000 genomes]
rs62430317	0.82[ASN][1000 genomes]
rs62430318	0.82[ASN][1000 genomes]
rs62430319	0.82[ASN][1000 genomes]
rs62431677	0.96[ASN][1000 genomes]
rs62431680	0.96[ASN][1000 genomes]
rs62431681	0.96[ASN][1000 genomes]
rs9375955	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs745091	ENPP1	cis	parietal	SCAN
rs745091	SAMD3	cis	cerebellum	SCAN
rs745091	HBS1L	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
4	chr6:133657400-133660800	Enhancers	Hela-S3	cervix
5	chr6:133657600-133658400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:133658000-133659000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:133658200-133658400	Enhancers	A549	lung
8	chr6:133658200-133659000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133658200-133659200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133658200-133659200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:133658200-133659200	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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